Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00859 ATGGAAAAGGAATCAAAGGAGCTACTTGTAAGAGAGTTCATCAGGGAAAAAGTCCCTGACTGGGATAACGAAGTGGTGGCCACAGCTTGGTTCAAGGCATTCAGTGGGCAAAAATCTGATTGGGAACCCAGATACCTATTTTGGAGGGATTTGATTCTCAAAATTTCCCATCAATTCAACTTCATCTTCATAAAACCTTCTGAAATAAAGAATCAATGGTTTTCTCGAGGCGGGTTGGCTCCACTCTGCCTTGACCATGTTCTGATTGAGGGCGACATTATAAGACGTAGTGACATGCTGGACCCAAGGGGTGGCCAACTCTCTTACTTGTTTAAAAAACTAAGCAATATGATGGGTACATCGAAAAAGAACCCCGACGGTTTGCTTTCCGATGATTATATAGTTCTTGCCTGTGTATTGCAGGATAGAGCAGCTGAAGTTGTCAAATGTTTATCTCATAGTAATTGGACCTCTTCCTGCGTAATTACAATGGTGAAGTTCCAGAACATATGTGGAGGACCTGATGAAGCGACTGCTATCCTGAGTTACTTGACTGAATGTGGTAAAGCAAGGTATCTCTCTAAAGAACAAAAGGAACTTGTAGAGGGTGTAAAGCTCTCTCTCTCAGCTGCGAAAGTTCCTGGTATCACGACCCTCGATTATGACATTTTGCACTTGATTTGGACAACAGAAAGGCTTCAGCGTCAACTTGATGTTTCTGAGGCTATTCAAATTGGTGCTCGGGTAATGAAAGAACACGAAGTTAGTTGGGACCAACTCCAGCATAGTTTGCATGAACTAGAAGCAAGCATCGATATACAAAAGCAAGTTGAAAGTGTTATAGACTCAGCTCCATCTGGCTCGATTCTCGAAGAGGAAGATATCGAGGAGGAGTTTAAGAAGCTCGAGTTGGAAGTAGCAGGCCAAAACCTTGACGCAACGACTTCAGACACGGGGGTTAATATTGCAACTGGTCACCAAGTTGCTACAGTTTCTGACGATTCATTGAGCGCTGCCTTATCAAATCTAAAGCTTGTTGGAGAAACAATTTCCTCAGTGGCCATGAATGGAGATGTAGCTACGGTGGTAACGGCGGCCGCACCGATGGGTTCAGCAGAGCCCCAGTACGTAAGGGCTAAGACTTCTGTATGGTGGGACATCGAGAACTGTCAGGTCCCTAAGGGCTGCGATCCTCACGCAATCGCCCAAAACATCAGCTCCGCCCTCGTGAAAATCAACTACTGCGGTCCTGTTTCCATTTCCGCCTACGGAGATACTAATCGCATTCCCAACTCTATTCAGCAAGCTCTCTCCAGTACTGGCATCGCCTTGAATCACGTCCCTGCCGGTGTTAAGGATGCAAGTGACAAGAAGATTCTAGTCGATATGTTGTTTTGGGCGGTCGATAACCCTGCTCCTGCAAATTATTTGCTAATTTCCGGTGATAGAGATTTTTCTAACGCGCTTCATCAATTAAGAATGAGAAGATATAATATTCTTCTTGCACAGCCACAAAGGGCTTCTGCACCACTAGTTGCAGCAGCAAAGAGTGTTTGGCTTTGGATGAGTCTTGTAGCTGGAGGACTTCCAATATCCAGTGCGGAATCATCTCAACTCGTGAACGGTACCCTTACTTCTGACCCTCAAATATCTCAGAACTCTGGACTTGATCATAATCAGCAGACAGCACAAGCTATAGTATACAAACCTGAAAATGTCTGTTTGGGAAACAACAAACATAAAGGTAAATCTATACATAAAAACTCCAACCAACCAGTCCAATCCAGAGCCTTAAGCTCGCCTGTTTCTAGGCACGAGGAAAACCCTAATTTTTTAAACCAATCAAATCATATCCAAGCAAAGCAGTTTAAGAAAGCACCGCATGAATTCTTCGGTAATAGCGGTAATAGCAGTTCTGTAGCCTCTTCTAGTCAGTCTACTCCAAACCTGTTTATTGAAAATTACACTCATGCTAGGACTGATGGTAGTGTTTCAATGGGTAGTTCCTCGAGTTACCAGCCTCCTCACGTGAGGCAAAAAACAATGCAGCTCCATCCTCCTTTTCGGCCAGATTATGTTTTTTCTCCTAACCCCGTTAATCGTAATTCTTTCCCAGTCCCTACTCAACCTGATCTCTCTGCACCCAATATCAGTAAGCTGCATATCTCTGATCACCCCAATTCTGCTATAAATCCTAAAAATTTTCATCATCAAGCTAGTGAATTTAGACCACATACTACGTCTCAAAACTTTGCCAACTTTAACTCGCCAGACAAAGGCCGCAGTCAGTATGGTAGCCAGTCATTCCATCATGATGCGTTGAATAAACGACATGCTCGTGATGTAGAGCATGCACCTCATTCATCTTCCACCACTCTTGCTAGAAGTTCTTCTTATAATGATGCCTGGGGATCTCAGGGGCAACCACCACCTTCGGAGTACATTCAAGGCCTTATTGGAGTTATTCTTCTTACATTAAACACCCTGAAAATGGAAAAAATTAGTCCAAATGAGGCAAATATAACTGACTGCATCCAATATGGAGACTTGAGAAACTGCAATACTGATGTAAAAATGGCACTAAACAGTGCGATAGAGCATAATATGGTAGTGAAGCATAATTTTGGAGCTGTGCAATTGTATGTTGGTAAAACAGAAAAATTGTGGAAGTGTGTGAACCCTCTAGGTGGGCATCCCAATCAATACCAAAAAGCTATATGGGATAAGATTCAGAATTTTTTGGCTTCTCCAGCTGGTCGTTCTGCAATAATGGCTTCTTCTTGCAGATATCAAGCAGCATTGATTCTAAGGAACGAATGCTTAACCGATTTTGCCTTGGGCGATGTGCTTCAGATTTTGTATATGATAACCTCAATGAGGAAATGGATTACTCATCATATTTCAGGATGGCAGCCAATTAATATTATGCTAACAGAAGGGAGTATTATTACAAAAGATACCAGAAGTTACTCGGATTACAGATGCTTAGGGCCTCAAAGGGCTTTGTATGTTACAACCATGCCATGTTTATTACTGCTTAAGGGAATGCCGGCAGTGGATCAGCTTGAAGAAGTCAGCCAGCGGATCCAACATGGTGCCATTCTCAAGCTTCTCTTTTCTTTTCTGTTCTCCATAGATATGGATGAAGCTCCTAAAATGTTCTTGTCTAGTTGTGTTACAGTAGGAGGAAAGCCTTTCCATATTGACATAAACAAACTAAAAATGGTCGAGAAGGTGGTCGTGACGGGCATGTCCCTCATGCTCGTCGTCGGTGTAGCTATGGCGGTCATCGCCGTCGTTAACAAGAACAAAAGTTCCGATTCTATGGTGGAGAATCTGTCCCCAAAGATGAAGGTTGTCTCATCCCTTTGTTCTTCTACAAATTATCAAAACGAATGTCAAAACACACTCGGCAGCACCGCTCATAACGCCTCAGCAAGTGACCCTAAGGCGTATGTTAAAGCCGCCATTCTTGCTACTGTTGAAGAGATTAAAAAGGGGTTTAACTTGTCTAATAACCTTATGGTGGAGGCTGCTAACAACGCCACCATCAAAATGAGTCTCGAGGATTGCAAAGACTTATTGCAATACGCCATTGATGAGCTACATGCTTCTTACTCCACTGTCGGCGACCCTGAATTACACACTAAGGAGGATCGCATAGCTGATATCAAGAACTGGCTCACGGCTGTGATTTCTTATCAGCAATCTTGTCTTGATGGTCTTGAGGAATTCGATCCCCAACTCCGAAAGAAGATGCAAGACACTCTTGATTTTGCTGGCAGGCTCACCAGCAATGCTCTGGCTCTTGTTGATGCTGTTTCCAGCATTCTTGAAAGATACGGCTTGCAATTTAAGATTAAACCAAGTGGGCGCAGGCTTCTTGGAGCAACTGAAATAGGGAGTGATGGGTTCCCGACATGGCTGTCGAGGACAGACAGGAAGCTGCTGGCAGCTAGAGGAGGTGGCGGCGGCAGAGCGAAGCCGAACGCTGTGGTGGCTAAGGACGGTAGCGGACAGTTCAAGAGCATTGCTGCTGCATTGGCTGCATACCCAAAAGGCTCAAAAGGAAGATATGTAATCTACGTGAAGGCAGGGATCTATAATGAGTATATCATTGTGACTAAAGAGATGAGGAACGTTTTCATGTATGGAGATGGCCCCAGAAAAACCCTTGTCACTGGCCGGAAATGCAACCGTGATGGCATCACCACCCAAGACACCGCCTCTTTCTCCGCTCTAGGAAACGGATTCCTGTGCAAATCGATGGGGTTCCAAAACACAGCCGGCCCACAAGGCCACCAAGCCGTAGCCCTAAGAGTCCAATCCGACAAATCCGCCTTCTTCAACTGCAGAATGGACGGCTACCAAGACACCCTCTACGTGCAAACCCATCGTCAATTCTACCGGAACTGCGTCATCTCCGGCACCGTGGACTTCATCTTCGGCGACTCATCCACCATCATCCAAAACTCCTTAATCATCGTCCGGCGCCCAATGGACAACCAACAGAACACCGTGACAGCCCAAGGGCGGGCAGATATGAAAGAAATCTCCGGCCTAGTAATCCACAACTGCAGAATCGTACCAGAACAGAAGCTGTTCGCAGAGAGATTCAAGATTAAGACGTACCTGGGAAGGCCATGGAAGGCATATGCGAGAACCGTGATAATGGAGACGACATTGGGGGATTTCATTCAGCCGGTTGGGTACATGCCGTGGGCGGGGAACTTCGCGTTGGAAACTTGCTTGTATATGGAGTACGGGAACAGAGGGCCGGGGGCGAACACGAACAGGAGAGTGAAGTGGAAGGGCGTGAGAGTGATCGGCAGAAACGAGGCTCTGAAGTACACGGCTGGGCCGTTTATTCAGGGAAGAACGTGGCTTCCCACCACTGGTGGGCCCTACTTGTTGGGCTTCAGGATCTAG 4929 45.43 MEKESKELLVREFIREKVPDWDNEVVATAWFKAFSGQKSDWEPRYLFWRDLILKISHQFNFIFIKPSEIKNQWFSRGGLAPLCLDHVLIEGDIIRRSDMLDPRGGQLSYLFKKLSNMMGTSKKNPDGLLSDDYIVLACVLQDRAAEVVKCLSHSNWTSSCVITMVKFQNICGGPDEATAILSYLTECGKARYLSKEQKELVEGVKLSLSAAKVPGITTLDYDILHLIWTTERLQRQLDVSEAIQIGARVMKEHEVSWDQLQHSLHELEASIDIQKQVESVIDSAPSGSILEEEDIEEEFKKLELEVAGQNLDATTSDTGVNIATGHQVATVSDDSLSAALSNLKLVGETISSVAMNGDVATVVTAAAPMGSAEPQYVRAKTSVWWDIENCQVPKGCDPHAIAQNISSALVKINYCGPVSISAYGDTNRIPNSIQQALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQRASAPLVAAAKSVWLWMSLVAGGLPISSAESSQLVNGTLTSDPQISQNSGLDHNQQTAQAIVYKPENVCLGNNKHKGKSIHKNSNQPVQSRALSSPVSRHEENPNFLNQSNHIQAKQFKKAPHEFFGNSGNSSSVASSSQSTPNLFIENYTHARTDGSVSMGSSSSYQPPHVRQKTMQLHPPFRPDYVFSPNPVNRNSFPVPTQPDLSAPNISKLHISDHPNSAINPKNFHHQASEFRPHTTSQNFANFNSPDKGRSQYGSQSFHHDALNKRHARDVEHAPHSSSTTLARSSSYNDAWGSQGQPPPSEYIQGLIGVILLTLNTLKMEKISPNEANITDCIQYGDLRNCNTDVKMALNSAIEHNMVVKHNFGAVQLYVGKTEKLWKCVNPLGGHPNQYQKAIWDKIQNFLASPAGRSAIMASSCRYQAALILRNECLTDFALGDVLQILYMITSMRKWITHHISGWQPINIMLTEGSIITKDTRSYSDYRCLGPQRALYVTTMPCLLLLKGMPAVDQLEEVSQRIQHGAILKLLFSFLFSIDMDEAPKMFLSSCVTVGGKPFHIDINKLKMVEKVVVTGMSLMLVVGVAMAVIAVVNKNKSSDSMVENLSPKMKVVSSLCSSTNYQNECQNTLGSTAHNASASDPKAYVKAAILATVEEIKKGFNLSNNLMVEAANNATIKMSLEDCKDLLQYAIDELHASYSTVGDPELHTKEDRIADIKNWLTAVISYQQSCLDGLEEFDPQLRKKMQDTLDFAGRLTSNALALVDAVSSILERYGLQFKIKPSGRRLLGATEIGSDGFPTWLSRTDRKLLAARGGGGGRAKPNAVVAKDGSGQFKSIAAALAAYPKGSKGRYVIYVKAGIYNEYIIVTKEMRNVFMYGDGPRKTLVTGRKCNRDGITTQDTASFSALGNGFLCKSMGFQNTAGPQGHQAVALRVQSDKSAFFNCRMDGYQDTLYVQTHRQFYRNCVISGTVDFIFGDSSTIIQNSLIIVRRPMDNQQNTVTAQGRADMKEISGLVIHNCRIVPEQKLFAERFKIKTYLGRPWKAYARTVIMETTLGDFIQPVGYMPWAGNFALETCLYMEYGNRGPGANTNRRVKWKGVRVIGRNEALKYTAGPFIQGRTWLPTTGGPYLLGFRI 1642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4329161 4342032 - CmaCh15G008590.1 Cma15g00859 310009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00859 1642 PANTHER PECTINESTERASE 1078 1639 - -
Cma15g00859 1642 Pfam Pectinesterase 1330 1625 IPR000070 GO:0030599|GO:0042545
Cma15g00859 1642 Gene3D - 375 523 - -
Cma15g00859 1642 MobiDBLite consensus disorder prediction 786 808 - -
Cma15g00859 1642 Pfam Plant invertase/pectin methylesterase inhibitor 1119 1270 IPR006501 GO:0004857
Cma15g00859 1642 ProSitePatterns Pectinesterase signature 1. 1355 1374 IPR018040 -
Cma15g00859 1642 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 1118 1274 IPR035513 -
Cma15g00859 1642 SMART PMEI_2 1115 1270 IPR006501 GO:0004857
Cma15g00859 1642 MobiDBLite consensus disorder prediction 743 808 - -
Cma15g00859 1642 Gene3D - 1325 1640 IPR012334 -
Cma15g00859 1642 SUPERFAMILY Pectin lyase-like 1327 1638 IPR011050 -
Cma15g00859 1642 MobiDBLite consensus disorder prediction 587 612 - -
Cma15g00859 1642 PANTHER PECTINESTERASE 4-RELATED 1078 1639 - -
Cma15g00859 1642 TIGRFAM PME_inhib: pectinesterase inhibitor domain 1103 1272 IPR006501 GO:0004857
Cma15g00859 1642 CDD PIN_limkain_b1_N_like 380 504 - -
Cma15g00859 1642 MobiDBLite consensus disorder prediction 771 785 - -
Cma15g00859 1642 Pfam NYN domain 380 516 IPR021139 GO:0004540
Cma15g00859 1642 CDD PMEI-like_3 1122 1276 - -
Cma15g00859 1642 ProSitePatterns Pectinesterase signature 2. 1474 1483 IPR033131 -
Cma15g00859 1642 Gene3D Invertase/pectin methylesterase inhibitor family protein 1117 1275 IPR035513 -
Cma15g00859 1642 MobiDBLite consensus disorder prediction 743 770 - -
Cma15g00859 1642 MobiDBLite consensus disorder prediction 577 612 - -
Cma15g00859 1642 Coils Coil 292 312 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00495 Cma-Chr4:2538364 Cma15g00859 Cma-Chr15:4329161 2.60E-30 dispersed
Cma06g00011 Cma-Chr6:87802 Cma15g00859 Cma-Chr15:4329161 5.64E-148 dispersed
Cma15g00859 Cma-Chr15:4329161 Cma04g01887 Cma-Chr4:9775204 1.16E-150 dispersed
Cma16g00360 Cma-Chr16:1709869 Cma15g00859 Cma-Chr15:4329161 2.27E-31 dispersed
Cma20g01079 Cma-Chr20:8289789 Cma15g00859 Cma-Chr15:4329161 1.07E-38 dispersed
Cma15g00859 Cma-Chr15:4329161 Cma04g02176 Cma-Chr4:15218549 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00859 K01051 - cmo:103503825 1029.62