Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00860 CCCTTTCCTCCATTTCCATTTTTTCTTCTCCCGAAGTTCTCTGTTCTAATGGCTGTTGACGTTCATTCCTCTTTTCCCAATGGAATTCGTGATCCTCCCACTAACCCTGACGAAATCGGTCAACTTCCATTAATGAATGCTTCTGATGATCCCAAGCTCAACACTAAGCTTTCAATCTCGCCCACTGTAGATGAAAATCAGATGAAGCTCTCTGATAATGAATCTCCCTCTTCTTGTTCTTCTTCTTCTTCTTCGTCGTCGTTCGATGTCGTGAAATCAGAGGATTCTACCCTTAACGGTCATATTCCTGTTCGTCCCCACCACGAATTGAAGCCCAATAATGGAGAGATACGCGTATTGGAGCCTCATTCTCAGCTTCCTAAACCCGAGGCCCCACCTGGACTTTCCGTTTCCGCAGTTGGTGAACCGCCGTACAAACGATCGCAGAGTTTGGTCGAGAATAACTCCGTCGACATGTCGTCGATTGGGAAGTTTATACGGGAGAGAAGCAATAGCTTATCGGCCGCGATTCTCAAGCGGATTTCGTCGCTTAAGGATGAAGAGAAGGACGACGTGGACGAGAACGGGAAGTCTCAGACCGGCGTCACTGAAATCAACCTCTCCGGTTTCAAAGTGGTCGTGAAGCGGAAGAGCGATGAAGAGAGAGACAGAGAACTCAAGGGAAGAATCAGCTTCTTCTCGAGGTCGAATTGCAGGGATTGTAAAGCGGTTAGGAGTTTCTTCAACGAAATGGGATTGAGATTTGTTGAGATCAACGTCGACGTTTTTCCTCAGAGAGAGAAGGAGCTGATGAAGAGGACTGGGAGTTCATTGGTGCCGCAGATTTTCTTCAATGAGAAGCATTTTGGAGGTCTCGTGGCACTGAACGCACTGAGAAACAGCGGCGAATTTGATCGGAGAATCAGAGATATGCTCAGCAATAAATGTCCCGACGACGCACCGGCTCCACCGGTCTACGGTTTCGACGATCCAGAGGAGGGATCGCCGGACGATCTACTGGAGATCGTGAAATTTCTGAGACAGAGATTGCCGATTCAGGACCGTCTGATCAAGATGAAGATCGTCAAGAACTGCTTTTCTGGCAGCGAAATGGTGGAAGCGCTTATTCAGCGCCTTGATTGCGGCCGTAGAAAGGCTGTTGAAATTGGAAAGCAGATGACCCAGAAGCTCTTTATCCATCATGTCTTTGGGGAAAGTGAATTTGTAGATGGGAAACATTTCTACCGTTTCCTTGAGCATGGGCCATTTATATCCCGGTGTTTCAATTTCAGGGGCTCAGTTAATGACAATGAGCCCAAGCCCGCCGCCATGGTTGCACAAAAACTAGCCAAGATCATGTCCGCCATTTTAGAGTCCTATGCCTCTCAAGATCTCCAACATCTTGATTATCTCACCATAAGCAACACTGAAGAGTTTCGAAGGTACATGAACTTAATTCAAGATCTTCACCGCGTGAACCTATTGGAACTGTCACATGATGAAAAGTTGGCTTTTTTCTTAAACCTGTACAATGCTATGGTCATCCATGGCTTCATAAGATTTGGACGAGTAGAGGGTGTAATTGACAGAAAATCCTTCTTCTCCGACTTCCAATACTTGGTCGGCGGACACCCATATTCACTCATCGCCATCAAAAATGGGATTCTCAGAGGAAATAGAAGGCCACCCTACTCCCTTATCAAGCCCTTCAGCGCTTGTGACAAGCGATTGGAGCTTGCGTTTGGGAAAGTGAATCCGTTAATTCACTTTGGACTGTGGAATGGGACAAAGTCCAGCCCAAGACTCAGATTCTTTACTCCTCAAGGAGTGGAAGCAGAGCTAAGATGCGCCGCAAGGGAGTTCTTCCAAACTGGGGAAGTGGAGGTTGATTTGGACAAAAGAACTGTGCATCTCCCTGGAATCATCAAGTGGTTCAGTGTGGACTTCGGAGCAGAGAAGGAGATTTTGAGGTGGATAATGAGGTTCTTGGATGCCAAAAAAGCAGGCCTTTTGACGCACCTTTTGGGGGATGGAGGTGCTGTCAACATAGCCTACCAGAACTATAACTGGACCATGAATTCTTGTTGA 2088 46.93 PFPPFPFFLLPKFSVLMAVDVHSSFPNGIRDPPTNPDEIGQLPLMNASDDPKLNTKLSISPTVDENQMKLSDNESPSSCSSSSSSSSFDVVKSEDSTLNGHIPVRPHHELKPNNGEIRVLEPHSQLPKPEAPPGLSVSAVGEPPYKRSQSLVENNSVDMSSIGKFIRERSNSLSAAILKRISSLKDEEKDDVDENGKSQTGVTEINLSGFKVVVKRKSDEERDRELKGRISFFSRSNCRDCKAVRSFFNEMGLRFVEINVDVFPQREKELMKRTGSSLVPQIFFNEKHFGGLVALNALRNSGEFDRRIRDMLSNKCPDDAPAPPVYGFDDPEEGSPDDLLEIVKFLRQRLPIQDRLIKMKIVKNCFSGSEMVEALIQRLDCGRRKAVEIGKQMTQKLFIHHVFGESEFVDGKHFYRFLEHGPFISRCFNFRGSVNDNEPKPAAMVAQKLAKIMSAILESYASQDLQHLDYLTISNTEEFRRYMNLIQDLHRVNLLELSHDEKLAFFLNLYNAMVIHGFIRFGRVEGVIDRKSFFSDFQYLVGGHPYSLIAIKNGILRGNRRPPYSLIKPFSACDKRLELAFGKVNPLIHFGLWNGTKSSPRLRFFTPQGVEAELRCAAREFFQTGEVEVDLDKRTVHLPGIIKWFSVDFGAEKEILRWIMRFLDAKKAGLLTHLLGDGGAVNIAYQNYNWTMNSC 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4344900 4349479 + CmaCh15G008600.1 Cma15g00860 310010

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00860 695 PANTHER ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE 94 694 - -
Cma15g00860 695 Pfam Glutaredoxin 232 288 IPR002109 -
Cma15g00860 695 PANTHER F26K24.21 PROTEIN 94 694 - -
Cma15g00860 695 MobiDBLite consensus disorder prediction 101 116 - -
Cma15g00860 695 MobiDBLite consensus disorder prediction 51 94 - -
Cma15g00860 695 Pfam Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) 350 417 IPR000591 GO:0035556
Cma15g00860 695 Gene3D Glutaredoxin 226 312 - -
Cma15g00860 695 SUPERFAMILY Thioredoxin-like 228 310 IPR036249 -
Cma15g00860 695 CDD DEP 338 416 - -
Cma15g00860 695 Gene3D - 338 468 IPR036388 -
Cma15g00860 695 SUPERFAMILY Winged helix DNA-binding domain 338 442 IPR036390 -
Cma15g00860 695 ProSiteProfiles Glutaredoxin domain profile. 218 315 - -
Cma15g00860 695 Pfam Protein of unknown function, DUF547 496 621 IPR006869 -
Cma15g00860 695 MobiDBLite consensus disorder prediction 25 152 - -
Cma15g00860 695 SMART DEP_3 346 419 IPR000591 GO:0035556
Cma15g00860 695 ProSiteProfiles DEP domain profile. 346 419 IPR000591 GO:0035556
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00860 - - - csv:101218879 1150.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g03001 Cma-Chr4:19625433 Cma15g00860 Cma-Chr15:4344900 1.30E-129 dispersed
Cma15g00046 Cma-Chr15:248426 Cma15g00860 Cma-Chr15:4344900 2.83E-127 dispersed
Cma15g00860 Cma-Chr15:4344900 Cma14g00882 Cma-Chr14:4570725 1.94E-21 dispersed
Cma15g00860 Cma-Chr15:4344900 Cma04g02172 Cma-Chr4:15195460 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1073 . . . . . . Bma14g01625 . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0665 Cone19ag0662 . . . . . . . . Bda07g01448 . Bpe11g01619 . . . . . Cmo15g00895 . Cma15g00860 . Car15g00811 . . . . . . . . . . . . . . . . . . Chy09g00445 Cme09g01240
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007007 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00860 Cma_Chr15 FPKM 3.351907 4.612742 5.381902 5.473005 2.750153 1.8787 2.003592 0.372278 0.481084 0.891694