Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00864 ATGGGTATTACACTTTTGTTCCTTTTTCACTCGCTTTGCTGCTGCTTCTTCTATGTTCACGTCTCCATCTCCATCGATGCAAAGTGCCACCCTGCTGATTTCAAAGCCTTGAAAAGCTTTTCCAATGGCCTTGACTCCCCAGTTCAAGGTTGGGACTATGGGTTCTCTGATTGTTGCCATTGGAAAGGAGTAACCTGTAATCCACCAGCTTTGAAGCTCAACAGTTCCAGTGTTTTCTCCAGAGTTATGGCTTTGGAACTTCCCCAGGAGAGGTTAAGAGGAAATGTTTCGGAGTCTTTGGCAGATTTGGTTTGTCTCAGAACTCTTAACTTGTCAACCAACTTTCTCTCACGTTCTCTTCCGGTGAATCTCTTCTCCCTGCAGAGTTTAGAGGTCATTGATTTGAGTTCTAATGATCTCTCCGGTTATGCGCCATGGAATATCAGTTCATCCTCCATTACGTTTCTTGACATTTCTAAGAACAAGTTCATTGGAGACGTTGACCCTGGCTTCTGTTCAACTGCAAAACAGATCCAAGTATTGAAACTTTCTTCAAACAGATTTCATGGAAGAGTTCTTCCAGGTTTTGGGAATTGCAGTTCCTTGGAGCATCTCTCTCTAGCTTCCAACTTCCTCTCTGGTGATTTGCCTCAAGATCTGTTTGCATTGTTCAACCTCAAAACCCTAGAACTTCGTGATAATTGGTTTTCCGGGGAGTTGAGTTTTCAACTTGGGAACCTCTCGAATCTCGTCTTATTGGATGTTTCATCGAACAATTTCTCGAGATTGCTTCCGGATGTGTTTTTCAATCTCCGGAAGCTCGAGCAATTCGCTGCATCGTCGAATAATTTCTCTGGCGTTTTGCCGGTTTCGTTGTGCAATTCGCCAACCATTTCATCGCTTAGTCTTGATAACAATTCCTTCCGTGGTTCAATCGATGTTATCAACTGTTCCGCCATGGTTCGTTTGGTTTCTTTGAATCTTGGCTCGAATCATTTCACTGGCCAAATTGAGAGTCTCTCATCTTGCCATCAACTACGCATTGCAAATCTTGCCAAGAACAGATTCGAGGGGGATTTTCCAGAAAGCTTCAAGAATCTCAGATCACTTTCTCACTTCTCGATTTCAAGAAATGGCCTCCGTAATCTCTCAGCAGCTTTGACAACTCTTAATCATTGCAAGAACTTGACTGTGTTGATTCTAACCTTCAATTTCTATGGAGAGATTGTGCCTGCAAATTTGAACTTGAGTTTTGAGAATACGAGACTGTTTGTGATTGCAAATTGTGGACTCACCGGTTCAATACCGCCATGGCTGAGCAATAGCGCAAAGCTCCAGATTCTGGACCTGTCATGGAACTCTTTAAGTGGAGAAATTCCGTCTTCCATTGGTGACTTGCGATATCTCTTCTACTTGGATCTGTCTAACAACTCGTTATCCGGTTCAATCCCTAGGAGCATCACGCAATTTCATAGCCTCATCGATCTGAATAACTCGTTGAAAGGGGAAATATACGAGGGATTCTCGTTTTTCAACAGAAATACCCAATCCGCAGGACGACAATACAAGCAAGTCTTAGGGATGCCGCCATTAGTGGATCTCAGTTACAACGAATTGAGCGGAATTATTTCGGCAGAATTTGGGAATCTGAAAGATCTCCATGTGTTAGACCTTAGCAACAACAAATTATCAGGAACAATTCCAAGTACTCTATCAAACATGACGGATTTAGAAAGCTTGGATCTATCCTACAACAATCTAACAGGAACTATTCCAGATTCATTGGCGAATCTCAACTTCCTTTCAACGTTTAATGTGGCTCACAATCACCTTCACGGCCGCATCCCTTCGCAAGGACAGTTCTATACATTTCCGAATTCGAGCTTTGTGAGTAACGATGAACTCTGCGGGTTTCAGACATTTTCTTGTGAGGAAGAATCTGCATCTGACGATGAAGAGAACTCGATTGGTGAAGATGAGGATGAAAGCTTGAGGTCACTTGTAAGCGTGCCACTGAGTGTCGGAGGTGCCGTCGGATTCGTTTCGACAGCCGCCGTTTGCTTCTTCTCCGGCATGAATCTCTCTGCGTTTGAATTTCAAGCGATCGAACGGCGGCACTCTTCGCAGTGGCGCGCACTCGCACCCATTTGGGTCTCTAAGATTTTAGTTGAATTGAAAGAAGATCCAAAGTTAGCTCTTAAGTTCTTCAAATGGGCAGGAAGCCAGATTGGTTTCTGCCATGCCACCGAGTCTTACTGCATTATAGCTCACATGCTGTTTTGTGCGAGAATATTATCAAAGTCGGGGAATGGACAGTTGGTGAAGAAGTTTTTCAATGATATGATTGGGGCTGGGATTGCACCTTCTGTTTTTACTTACAATGTAATGGTAGATTACTTGTGCAAAGAAGGGGATTTGGAAAACGCTAGACGTTTGTTTGTGCAAATGAGACAAATGGGCTTTTCTCCAGATGTTGTCACCTATAATTCCTTGATTGATGGCTATGGCAAGATGCCTCGAGCTTTTGAGTATCTCTCTGAGATGAAGAACAGTGGGTTAAAACCAAATGTTGTAACATATAGCACATTGATTGATGCTTTTTGCAAGGGGGGAATGATGCAATATGCCATCAAACTTTTTGTTGATATGAGAAGAGTTGGCCTGCTACCTAATGAATTCACCTACACTTCTCTGATTGATGCCAATTGTAAGGCAGGTAATTTAACAGAAGCATGGAAGTTGTCCAACGATATGTTGCAGGCAGGAGTTAATTTAAATGTAGTATCCTATACAGCTCTAATGGATGGGCTTTGTGAAGATGGAAGAATGATGGAAGCGGAAGAAGTGTTTAAGGCAATGCTGAAAGATGGACTATCGCCCAACCAGCAGCTTTACACTGCTTTGGTTCATGGCTATATTAAGGCAGAGAGAATGGAGGATGCAATGGAAATATTGAAGCAAATGACAGAATGTAACATCAAACCAGATTTAATACTCTATGGCACCGTTATTTGGGGTCTCTGTAGTCAAAACAAACTTGAAGAAACTAAACTTATTATTAAAGAAATGAAAAGTCAGGGTATTAGTGCAAATCCTGTTATATACACAACAATTATGGATGCTTATTTTAAGGCTGGAAAAAGCTCAGATGCAATAAATCTTCTTCATAAGATGCAGGATATGGGTGTTGAGGCTACTGTTGTAACCTACTGTGTACTAATTGATGGTTTGTGCAAAACAGGTTTGGTCGAACTGGCATTTGATTATTTTAGTAGAATGTCCGATCTTGGTTTACAACCTAATGTCGCAGTTTATACAGCCCTTATAGATGGTCTTTGTAAAACTAATTGCATTGAGTCTGCCAAAAAGTTGTTTGATGAAATGCAATATAGGGGTATGACCCCAGATAAAACAGCTTTTACTGCTCTAATTGATGGCAACTTGAAGCTTGGAAATCTTCAGGAAGCTTTGGATTTGATTAGCAGAATGACAGACTTAGCTATTGAGTTTGATTTACATGCTTATACCTCCATGGTTTCGGGATTTTCTCAATGTGGTGACCTGCATCAAGCGAGGAAGTTTTTAAATGAAATGATTGAGAAGGGAATACTTCCCGAGGAGATTTTATGTACATGTCTACTGAGAGAGTATTACAAGCTTGGACAGTTGGACGAAGCCATTGAATTGAAGAATGAAATGAGGAGGAGGGGTTTAATTACTGAACAGTGA 3729 41.59 MGITLLFLFHSLCCCFFYVHVSISIDAKCHPADFKALKSFSNGLDSPVQGWDYGFSDCCHWKGVTCNPPALKLNSSSVFSRVMALELPQERLRGNVSESLADLVCLRTLNLSTNFLSRSLPVNLFSLQSLEVIDLSSNDLSGYAPWNISSSSITFLDISKNKFIGDVDPGFCSTAKQIQVLKLSSNRFHGRVLPGFGNCSSLEHLSLASNFLSGDLPQDLFALFNLKTLELRDNWFSGELSFQLGNLSNLVLLDVSSNNFSRLLPDVFFNLRKLEQFAASSNNFSGVLPVSLCNSPTISSLSLDNNSFRGSIDVINCSAMVRLVSLNLGSNHFTGQIESLSSCHQLRIANLAKNRFEGDFPESFKNLRSLSHFSISRNGLRNLSAALTTLNHCKNLTVLILTFNFYGEIVPANLNLSFENTRLFVIANCGLTGSIPPWLSNSAKLQILDLSWNSLSGEIPSSIGDLRYLFYLDLSNNSLSGSIPRSITQFHSLIDLNNSLKGEIYEGFSFFNRNTQSAGRQYKQVLGMPPLVDLSYNELSGIISAEFGNLKDLHVLDLSNNKLSGTIPSTLSNMTDLESLDLSYNNLTGTIPDSLANLNFLSTFNVAHNHLHGRIPSQGQFYTFPNSSFVSNDELCGFQTFSCEEESASDDEENSIGEDEDESLRSLVSVPLSVGGAVGFVSTAAVCFFSGMNLSAFEFQAIERRHSSQWRALAPIWVSKILVELKEDPKLALKFFKWAGSQIGFCHATESYCIIAHMLFCARILSKSGNGQLVKKFFNDMIGAGIAPSVFTYNVMVDYLCKEGDLENARRLFVQMRQMGFSPDVVTYNSLIDGYGKMPRAFEYLSEMKNSGLKPNVVTYSTLIDAFCKGGMMQYAIKLFVDMRRVGLLPNEFTYTSLIDANCKAGNLTEAWKLSNDMLQAGVNLNVVSYTALMDGLCEDGRMMEAEEVFKAMLKDGLSPNQQLYTALVHGYIKAERMEDAMEILKQMTECNIKPDLILYGTVIWGLCSQNKLEETKLIIKEMKSQGISANPVIYTTIMDAYFKAGKSSDAINLLHKMQDMGVEATVVTYCVLIDGLCKTGLVELAFDYFSRMSDLGLQPNVAVYTALIDGLCKTNCIESAKKLFDEMQYRGMTPDKTAFTALIDGNLKLGNLQEALDLISRMTDLAIEFDLHAYTSMVSGFSQCGDLHQARKFLNEMIEKGILPEEILCTCLLREYYKLGQLDEAIELKNEMRRRGLITEQ 1242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4355842 4360824 + CmaCh15G008640.1 Cma15g00864 310014

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00864 1242 Gene3D Tetratricopeptide repeat domain 1024 1092 IPR011990 GO:0005515
Cma15g00864 1242 Gene3D Tetratricopeptide repeat domain 1093 1165 IPR011990 GO:0005515
Cma15g00864 1242 Gene3D Tetratricopeptide repeat domain 955 1023 IPR011990 GO:0005515
Cma15g00864 1242 Gene3D Tetratricopeptide repeat domain 1166 1236 IPR011990 GO:0005515
Cma15g00864 1242 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 789 823 IPR002885 -
Cma15g00864 1242 PANTHER OS06G0565000 PROTEIN 765 838 - -
Cma15g00864 1242 SUPERFAMILY L domain-like 55 239 - -
Cma15g00864 1242 TIGRFAM PPR: pentatricopeptide repeat domain 791 825 IPR002885 -
Cma15g00864 1242 TIGRFAM PPR: pentatricopeptide repeat domain 858 892 IPR002885 -
Cma15g00864 1242 TIGRFAM PPR: pentatricopeptide repeat domain 893 926 IPR002885 -
Cma15g00864 1242 TIGRFAM PPR: pentatricopeptide repeat domain 1209 1238 IPR002885 -
Cma15g00864 1242 TIGRFAM PPR: pentatricopeptide repeat domain 1104 1136 IPR002885 -
Cma15g00864 1242 TIGRFAM PPR: pentatricopeptide repeat domain 928 961 IPR002885 -
Cma15g00864 1242 TIGRFAM PPR: pentatricopeptide repeat domain 999 1031 IPR002885 -
Cma15g00864 1242 TIGRFAM PPR: pentatricopeptide repeat domain 1033 1066 IPR002885 -
Cma15g00864 1242 TIGRFAM PPR: pentatricopeptide repeat domain 965 996 IPR002885 -
Cma15g00864 1242 TIGRFAM PPR: pentatricopeptide repeat domain 1068 1102 IPR002885 -
Cma15g00864 1242 TIGRFAM PPR: pentatricopeptide repeat domain 1174 1205 IPR002885 -
Cma15g00864 1242 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 765 838 - -
Cma15g00864 1242 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1031 1065 IPR002885 -
Cma15g00864 1242 Gene3D Tetratricopeptide repeat domain 700 838 IPR011990 GO:0005515
Cma15g00864 1242 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1066 1100 IPR002885 -
Cma15g00864 1242 SUPERFAMILY L domain-like 180 632 - -
Cma15g00864 1242 SMART LRR_typ_2 550 573 IPR003591 -
Cma15g00864 1242 SMART LRR_typ_2 247 270 IPR003591 -
Cma15g00864 1242 SMART LRR_typ_2 367 390 IPR003591 -
Cma15g00864 1242 SMART LRR_typ_2 199 223 IPR003591 -
Cma15g00864 1242 SMART LRR_typ_2 103 127 IPR003591 -
Cma15g00864 1242 SMART LRR_typ_2 574 598 IPR003591 -
Cma15g00864 1242 SMART LRR_typ_2 466 490 IPR003591 -
Cma15g00864 1242 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 856 890 IPR002885 -
Cma15g00864 1242 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 926 960 IPR002885 -
Cma15g00864 1242 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Cma15g00864 1242 Pfam PPR repeat family 1031 1079 IPR002885 -
Cma15g00864 1242 Pfam PPR repeat family 856 904 IPR002885 -
Cma15g00864 1242 Pfam PPR repeat family 926 962 IPR002885 -
Cma15g00864 1242 Pfam PPR repeat family 1100 1146 IPR002885 -
Cma15g00864 1242 Pfam PPR repeat family 788 836 IPR002885 -
Cma15g00864 1242 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1101 1135 IPR002885 -
Cma15g00864 1242 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 891 925 IPR002885 -
Cma15g00864 1242 Gene3D Ribonuclease Inhibitor 317 652 IPR032675 -
Cma15g00864 1242 Pfam Leucine Rich Repeat 444 464 IPR001611 GO:0005515
Cma15g00864 1242 Pfam Leucine rich repeat 553 611 IPR001611 GO:0005515
Cma15g00864 1242 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 837 1241 - -
Cma15g00864 1242 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 961 995 IPR002885 -
Cma15g00864 1242 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1136 1170 IPR002885 -
Cma15g00864 1242 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1206 1240 IPR002885 -
Cma15g00864 1242 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 996 1030 IPR002885 -
Cma15g00864 1242 PANTHER OS06G0565000 PROTEIN 837 1241 - -
Cma15g00864 1242 Pfam PPR repeat 1210 1238 IPR002885 -
Cma15g00864 1242 Pfam PPR repeat 1174 1203 IPR002885 -
Cma15g00864 1242 Pfam PPR repeat 965 993 IPR002885 -
Cma15g00864 1242 Pfam PPR repeat 999 1028 IPR002885 -
Cma15g00864 1242 ProSiteProfiles Leucine-rich repeat profile. 576 599 IPR001611 GO:0005515
Cma15g00864 1242 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1171 1205 IPR002885 -
Cma15g00864 1242 Gene3D Ribonuclease Inhibitor 31 316 IPR032675 -
Cma15g00864 1242 PRINTS Leucine-rich repeat signature 469 482 - -
Cma15g00864 1242 PRINTS Leucine-rich repeat signature 550 563 - -
Cma15g00864 1242 SUPERFAMILY HCP-like 964 1229 - -
Cma15g00864 1242 Gene3D Tetratricopeptide repeat domain 839 954 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00864 - - K17710 csv:101218406 1042.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00026 Cma-Chr1:114127 Cma15g00864 Cma-Chr15:4355842 3.78E-06 dispersed
Cma04g00078 Cma-Chr4:385256 Cma15g00864 Cma-Chr15:4355842 2.22E-10 dispersed
Cma15g00864 Cma-Chr15:4355842 Cma16g00404 Cma-Chr16:2006173 6.41E-138 dispersed
Cma04g00002 Cma-Chr4:7101 Cma15g00864 Cma-Chr15:4355842 6.67E-167 transposed
Cma19g00977 Cma-Chr19:8540060 Cma15g00864 Cma-Chr15:4355842 1.88E-19 transposed
Cma15g00864 Cma-Chr15:4355842 Cma04g02165 Cma-Chr4:15171865 6.95E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1080 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma15g00864 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013257 0 1 0 0 0 1 1 1 1 0 1 1 1 1 2 1 1 0 1 1 2 0 1 1 1 1 2 2 1 0 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00864 Cma_Chr15 FPKM 12.027062 13.127671 8.099334 8.948671 9.109656 9.066302 10.181114 3.090364 2.836172 3.134707