Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00867 ATGGCCGTCACTGGCTCTCCCGACTGGTCACTCCCCTCATCAACCTGTTTCAGAAAATCCCGTCTCATTACTTTCATCCCCGCCTCCAATCTCGCTCTCCTTTTTTCTCTTCCAAATCTTCGATCTCTTCACCTAAATTCCTCCGGGTGTCCGTCTCCAATCCTAGAATCATCGCCCACTTCCCTGCCCGAGATCGATTCGGACTCTAATCTTCAGGATTTTCAACTTCCCTCGTCGTCCAGTGTAGAAGATTTGAACGATTTCTTATGTGGATTACCCCAAAACCCCGGACGGGAGGATTTGATCTATGAGTACTACGTGAAAGCGAAGGAGACGCCAGGGTTTAGACCTGAGAAATCAACATTGAGGCATCTAATCAGGTACTTAGTGCGATTGAAGAAGTGGAGTTTGATTTTGTTAGTTTCTAGAGATTTTGTGGATTATGATGTTTGCCCTGATAGAGATACTTGTTCTAGATTGGTTAGTAGTTGCGTTAGAGGTAGGAAATTTAAAGTTGTTAGGGCTCTGCTTGAGGTTTTTGAACGGGATAGGGATGTTGCTACGGCTGCATTTGAAGCTGCCATGAGAGGCTACAATAAGCTTCATATGTACAGAAGTACTATCCTGGTTTTCCAGCGCTTGAAATCTGCGAAAATTGAAGCAGATTCTGGATGTTATTGCAGGGTCATGGAAGCCTACCTTAAACTTGGGGATTCTGAGAGAATTATGGAACTGTTTAATGAAATTGAGAGTAGGATTTCTGATTTTACACCCTTTTCCACCAAAATTTATGGAATACTTTGTAAGTCTTTAGCGAAATCCGGGCGAGTTTTCGAGTCGCTTGAGTTCTTTAGAGATATGAGGAAGAAAGGGATTGTAGAAGATTACACCATTTACTCTGCTTTGATATGCACTTTTGCAAGCATCCAAGAAGTTAAATTAGCTGAAGATCTTTACAATGAAGCAAAAACCAAGAAATTGTTGAGAGACCCTGCAACGTTTCAAAAGCTTATATTGATGTATATTCAACAAGGGTCATTAGAGAAAGCACTTGAGATTGTTGAAGTCATGAAGGACTTCAAAATTGGTGCATCAGATTGCATTTTCTGTGCAATTGTCAATGGCTACGCCACGAGAAGGGGCTATAATGCTGCGGTTAACATTTACGAAAAGCTGATTAGAGATGAATGTGAGCCGGGACAAGTGACGTACGCCTTGGCGATCAACGCTTACTGCCGTGTCGGGCTGTACTCAAAAGCGGAGGACGTGTTTGTAGAAATGGAGGAGAAGGGGTTTGATAAATGTGTAGTTGCTTACTCTAGCTTGATATCAATGTATGGGAAGACAGGGAGATTGAAGGATGCAATGAGGCTGTTAGCAAAGATGAAAGAAAGAGGGTGTCAGCCAAATGTTTGGATTTACAATATCCTGATGGAGATGCATGGGAAGGCTAAGAATTTGAAGCAAGTTGAGAAGCTATGGAAGGAAATGAAGCGCAAAAAGATAGCACCTGATAAGGTTAGCTATACAAGTATCATAAATGCTTATGTGAAGGCAGCAGAATTCGAGACATGCGAACGATATTACCGTGAGTTTCGGATGAACGGGGGAACCATCGACAAGGCGATAGCAGGAATCATGGTTGGCGTGTTCTCGAAGACGAGTCGGGTTGATGAACTAGTGAAGCTTCTTAGGGACATGAACTTAGAAGGAATACGCTTGGATGAGAGGCTGTATAGGTCAGCCTTGAATGCTTTGATGGATGCTGGGTTGCAAGTGCAAGCAAAATGGTTGCAAGATCATTATGCTGGAAAGTCGGGCTTTGTTTAA 1830 42.84 MAVTGSPDWSLPSSTCFRKSRLITFIPASNLALLFSLPNLRSLHLNSSGCPSPILESSPTSLPEIDSDSNLQDFQLPSSSSVEDLNDFLCGLPQNPGREDLIYEYYVKAKETPGFRPEKSTLRHLIRYLVRLKKWSLILLVSRDFVDYDVCPDRDTCSRLVSSCVRGRKFKVVRALLEVFERDRDVATAAFEAAMRGYNKLHMYRSTILVFQRLKSAKIEADSGCYCRVMEAYLKLGDSERIMELFNEIESRISDFTPFSTKIYGILCKSLAKSGRVFESLEFFRDMRKKGIVEDYTIYSALICTFASIQEVKLAEDLYNEAKTKKLLRDPATFQKLILMYIQQGSLEKALEIVEVMKDFKIGASDCIFCAIVNGYATRRGYNAAVNIYEKLIRDECEPGQVTYALAINAYCRVGLYSKAEDVFVEMEEKGFDKCVVAYSSLISMYGKTGRLKDAMRLLAKMKERGCQPNVWIYNILMEMHGKAKNLKQVEKLWKEMKRKKIAPDKVSYTSIINAYVKAAEFETCERYYREFRMNGGTIDKAIAGIMVGVFSKTSRVDELVKLLRDMNLEGIRLDERLYRSALNALMDAGLQVQAKWLQDHYAGKSGFV 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4364340 4366169 + CmaCh15G008670.1 Cma15g00867 310017

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00867 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 504 IPR002885 -
Cma15g00867 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 505 539 IPR002885 -
Cma15g00867 609 Gene3D Tetratricopeptide repeat domain 256 378 IPR011990 GO:0005515
Cma15g00867 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Cma15g00867 609 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 1 603 - -
Cma15g00867 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Cma15g00867 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Cma15g00867 609 TIGRFAM PPR: pentatricopeptide repeat domain 264 293 IPR002885 -
Cma15g00867 609 TIGRFAM PPR: pentatricopeptide repeat domain 437 471 IPR002885 -
Cma15g00867 609 TIGRFAM PPR: pentatricopeptide repeat domain 473 505 IPR002885 -
Cma15g00867 609 TIGRFAM PPR: pentatricopeptide repeat domain 507 536 IPR002885 -
Cma15g00867 609 TIGRFAM PPR: pentatricopeptide repeat domain 402 432 IPR002885 -
Cma15g00867 609 Pfam Pentatricopeptide repeat domain 484 518 IPR002885 -
Cma15g00867 609 Pfam Pentatricopeptide repeat domain 321 376 IPR002885 -
Cma15g00867 609 Pfam Pentatricopeptide repeat domain 423 483 IPR002885 -
Cma15g00867 609 Pfam PPR repeat 265 292 IPR002885 -
Cma15g00867 609 Pfam PPR repeat 226 251 IPR002885 -
Cma15g00867 609 SUPERFAMILY TPR-like 291 429 IPR011990 GO:0005515
Cma15g00867 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Cma15g00867 609 PANTHER OSJNBA0088A01.11 PROTEIN 1 603 - -
Cma15g00867 609 Gene3D Tetratricopeptide repeat domain 97 255 IPR011990 GO:0005515
Cma15g00867 609 Gene3D Tetratricopeptide repeat domain 379 499 IPR011990 GO:0005515
Cma15g00867 609 Gene3D Tetratricopeptide repeat domain 500 570 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00867 - - - bhj:120067018 1093.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00867 Cma-Chr15:4364340 Cma07g00014 Cma-Chr7:95158 4.67E-09 dispersed
Cma15g00867 Cma-Chr15:4364340 Cma14g00217 Cma-Chr14:934071 4.51E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1089 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0676 . . . . . . . . . . . . . . . . . Cmo15g00902 . Cma15g00867 . Car15g00816 . . Bhi12g01005 . . . . . Lcy10g1566 Cla01g00682 Cam01g0715 Cec01g0706 Cco01g0736 Clacu01g0701 Cmu01g0673 Cre09g1832 Lsi09g00740 Csa05g01316 . Cme09g01257
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013247 0 3 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00867 Cma_Chr15 FPKM 0.318033 0.57309 4.393106 5.794951 21.734058 19.773838 22.504175 4.361265 4.911532 4.488407