Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00870 ATGGTGCCACTCGTAACGGAGCTTCCCGTAATCAATGGCTTTCACCCATTGCTCCGTTCCTCCTTATGCCCTTGTTCTTGTTCCTCAATTCGCAGCCTCTTCTTTCCCCGCAGGAAGATGTTTCTGGGGTTGGCTGGATATCGGAATTCCTACCCGTTTCTGAGTACTACAGCGAACAGTTCTTTGTCAAATGCTGCTGGAAGGGCCAATACGGAGAAGGATTTCTGGGATGATTATGAGTTCGTGGAAGTGATTGGCATTGGCAGTAGAAAGGAAGCCGTACTTGATTTTTGTCTCGAGTCGGCTCTCAGGATTTCATCTCTGCGATTTTGGCAAATCGTAAAGCATGATTCTCTAAAAGTGCAACTACTTCAGAGATTCATTGGAAAAGATTATAACCCAAGGATGATTGACGTTCCACTGTCCCTACAATCGTGTTCGAAGGCTGTTATACTTGTGGTTAGCGCTGGATATGGCTTGGATTACTCTGCAGCTGTTGATATTCTTAGAACCGTAAGATCTGCAAATGGATTTACTGTAACAATTGTCTTAAAGCCTTTTAGCTTTGAAGGCCAAAGGCGCCAGGATGAGGTTAAACATCTGGTAGGAAGTCTAAAGGAACATACAAGCTTCTTAATCGATATTGACACCGATAGACTACTTGAAAAGGACTTGGTGACTCTTGATGAGGCTGTGAGATCTGCTAATAATGCTGTCTTGATGGCTATAAATTCAATATCCATTATCAAGTCTGAAATGTTGACTAAGTTCATAGATGAGCCTCAGAATAGTGTAAAAGAGCTTGGTGTTATAGACGTCATGGAAATTTTGGAGAACCTTAAAGAAGGAAAGATTGGATTTGGAGCCGGTCACAACTTTCGGACCTCAGTCTTAAAGTCAATTTATGACTGCCCTTTCCTCAGTGTGCATTTAAAGGATTTGAAAGGTGCAGTTTTATGTATCGTGGCAAGCTCAAGTATTATTGATGACAATGATAAAAGTACCCTGTTGAAAACTTTTCGTGAAGTTACAGCATATACAGGAAAAGTTATATTATCCATAATTCAAGATCTAAATCTGGAGCCCAACTTTCTCATGACAACCATCCTTATTGTTGGCTCAACAAAGCAGCAATCTTCCAAAAGTAGTAGCATTTTATCAAGATTGGCCCAGCGTTTCCCTTCGGTTTTCAAGCTTCTATGGAAACCTCAAGAACCATTAGAGGAAGCTGAAGAAAGTGATATGCCTGAAGATGCAAATCCTTCCAATGTAAGAGAGTCATCAGACTCTGATATGGTCATAACTCAAATTGCTTCAGAGGGCTTGGATAAAGATTTTTATCAAGATCCTGAAAATCTTCAGACAACATTCAACTACAGTGATTTATTAAGTTCAAGGGGAACAAATGACAGTGATTTTGAACAACCTGAGGCTGGAATAGTAGAAACTGATGTGAATTCTTTGCCTTTCAGCAATGCAGTTAGTAGAGGAGCTTCTTTTCGCAGAGACCCCCTCCACAGATGGAATTTGGGTCCAGCACATCAGATTGCACAGCAGTGGGCTAGGGAAAGAGCTGCTGATGCTGAATTGGCTTCTGCATTTGACAGTATAAGCATATTTGACCTCCCAGTTGGGGTGAGAACTTCAGAAGAGCTGAAAGATAAATCCACTCCAAATCCAGAGATGAAATATGAGAAGAAATCTAAAGCTTCAATTACTACTTCCAGATTTTCTTCTCAGGCTTCGTTAACTGATACTAGTTTAGAAGTGATTAAGGAATTTTACGATACCTCATCTGCATTTTTAAGAGGGAAATCTCCTGACCTTCCTAAGAAGCAAGGACTTCTGTCTGCTCGTGCTGCATCAATGCTGGAAGCCGAGCGAGATTCACCTAAAAAGTGGAGTCCTGTTATGGAGTTGCAGTACAGAGGTGGCGTTTACAGGGGACGCTGCCAAGGAGGGCTCCCCGAAGGGAAGGGACGTCTAGTACTTCAAGATGGGAGCATATATGATGGTATGTGGCGCTATGGTATGAGATCAGGTCAAGGTACAGTCTACTTTAACAATGGAGATATGTTTCAAGGATCATGGAGAGATGATGTCATGCATGGAAAGGGCTGGTTTTATTTTCACACAGGGGATCGGTGGTTTGCAAACTTCTGGAAGGGAAAGGCTTATGGAGAAGGTCGCTTCTACTCAAAGTCAGGTGATGTTCTATTTGGTCATTTCCAAGATGGTTGGCGTCATGGCGACTTTCTTTGCATTAATGTTGACGGTTCAAGATACATAGAAGTTTGGAGTGAAGGTTATCTTATGGGACGTGAGAATTTGGAGTCCGGTGCTGATACTCCATAA 2355 42.04 MVPLVTELPVINGFHPLLRSSLCPCSCSSIRSLFFPRRKMFLGLAGYRNSYPFLSTTANSSLSNAAGRANTEKDFWDDYEFVEVIGIGSRKEAVLDFCLESALRISSLRFWQIVKHDSLKVQLLQRFIGKDYNPRMIDVPLSLQSCSKAVILVVSAGYGLDYSAAVDILRTVRSANGFTVTIVLKPFSFEGQRRQDEVKHLVGSLKEHTSFLIDIDTDRLLEKDLVTLDEAVRSANNAVLMAINSISIIKSEMLTKFIDEPQNSVKELGVIDVMEILENLKEGKIGFGAGHNFRTSVLKSIYDCPFLSVHLKDLKGAVLCIVASSSIIDDNDKSTLLKTFREVTAYTGKVILSIIQDLNLEPNFLMTTILIVGSTKQQSSKSSSILSRLAQRFPSVFKLLWKPQEPLEEAEESDMPEDANPSNVRESSDSDMVITQIASEGLDKDFYQDPENLQTTFNYSDLLSSRGTNDSDFEQPEAGIVETDVNSLPFSNAVSRGASFRRDPLHRWNLGPAHQIAQQWARERAADAELASAFDSISIFDLPVGVRTSEELKDKSTPNPEMKYEKKSKASITTSRFSSQASLTDTSLEVIKEFYDTSSAFLRGKSPDLPKKQGLLSARAASMLEAERDSPKKWSPVMELQYRGGVYRGRCQGGLPEGKGRLVLQDGSIYDGMWRYGMRSGQGTVYFNNGDMFQGSWRDDVMHGKGWFYFHTGDRWFANFWKGKAYGEGRFYSKSGDVLFGHFQDGWRHGDFLCINVDGSRYIEVWSEGYLMGRENLESGADTP 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4385677 4402652 + CmaCh15G008700.1 Cma15g00870 310020

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00870 784 PANTHER PROTEIN ACCUMULATION AND REPLICATION OFS PROTEIN 155 783 - -
Cma15g00870 784 MobiDBLite consensus disorder prediction 407 431 - -
Cma15g00870 784 Pfam MORN repeat 652 668 IPR003409 -
Cma15g00870 784 Pfam MORN repeat 670 692 IPR003409 -
Cma15g00870 784 Pfam MORN repeat 693 715 IPR003409 -
Cma15g00870 784 Gene3D - 649 705 - -
Cma15g00870 784 SUPERFAMILY Tubulin nucleotide-binding domain-like 83 248 IPR036525 -
Cma15g00870 784 PRINTS Cell division protein FtsZ signature 177 198 IPR003008 GO:0005525
Cma15g00870 784 PRINTS Cell division protein FtsZ signature 271 292 IPR003008 GO:0005525
Cma15g00870 784 Gene3D Tubulin/FtsZ, GTPase domain 124 373 IPR036525 -
Cma15g00870 784 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 644 769 - -
Cma15g00870 784 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 155 783 - -
Cma15g00870 784 SMART morn 645 666 IPR003409 -
Cma15g00870 784 SMART morn 691 712 IPR003409 -
Cma15g00870 784 SMART morn 668 689 IPR003409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00870 - - - csv:101217933 1328.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00870 Cma-Chr15:4385677 Cma04g01326 Cma-Chr4:6763579 5.05E-06 dispersed
Cma15g00870 Cma-Chr15:4385677 Cma14g00240 Cma-Chr14:1044324 6.86E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1110 . . Bda01g01766 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g01940 . . . . Cmo15g00905 . Cma15g00870 . Car15g00817 . . Bhi12g01003 . . . . . Lcy10g1569 Cla01g00679 Cam01g0711 Cec01g0703 Cco01g0732 Clacu01g0697 Cmu01g0672 Cre09g1833 Lsi09g00736 Csa05g01314 Chy09g00454 Cme09g01260
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009880 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 2 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00870 Cma_Chr15 FPKM 2.62736 2.598089 9.191124 11.057142 8.934442 10.80431 12.813805 12.226382 11.167139 12.583652