Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00872 ATGGCGTCATCTAACCCTTGTTCAAATTCCCATGAGTCCGTACATTCATCACCATTTGCTTCTCGCTATGTTCAAAACCCAACCCCAAAATTTGTAATGCCTGAAAACTCCATGTCCAAGGAGGCAGCAGCTCAGATCATCAACGACGAGCTCATGCTAGATGGCAACCCACGTCTCAATTTGGCATCCTTCGTCACCACATGGATGGAGCCCGAATGCGACAAGCTCATCATGGACTCAATCAATAAAAACTACGTCAATATGGACGAGTACCCTGTTACCACCGAGATTCAAAATCGGTGTATCAACATGATCGCCCATTTATTCAACGCTCCATTGGGAGATTCCGATGTGGCCGTGGGAGCTGGGACAGTGGGGTCGTCAGAAGCCATCATGTTGGCAGGGCTTGCCTTCAAGAGGAAGTGGCAGAGCAAGCGGAAGGCGGAAGGGAAGGCTTTTGATAAGCCTAATCTTGTGACGGGTGCTAATTTCCACGTTTGTTGGGAGAAATTTTGTAGGTATTTTGAAGTGGAGTTAAGGGAAGTGAAAGTTAGAGAAGGGTATTATGTTATGGACCCTTTTGAGGCTGTTGAGATGGTGGATGAGAACACTATTTGTGTTGCTTCAATTTTTGGTTCCACTTATAATGGGGAATTTGAAGATGTGAAGGTGTTGAATGATTTGCTGATGAAGAAGAATAAGGAAAGTGGATGGGATACGCCTATTCATGTGGATGCGGCCAGCGGTGGGTTCATAGCGCCGTTTTTGTATCCAGAGCTGGAATGGGACTTCCGGCTTCCTTTGGTGAAGAGTATCAATGTGAGTGGGCACAAGTATGGGCTTGTCTACGCTGGGATCGGGTGGGTCATTTGGAGAACTCGACAAGACTTGCCTCAACAACTCATTTTTCATATTGATTATCTTGGAGCTGATCAGTCTACCTTCACTCTTAACTTCTCCAAAGGGTCGAGCCAGGTGATTGCTCAATATTATCAATTAATCCGCCTCGGTTTTGAGGGATACCGCAAGGTGATGCAAAACTGTCGCGACAACGCCATGGCGTTGAAGGAAGGACTACAAAACACGGGGCGATTCACGATAGTGTCAAAGGACATCGGCGTGCCAGTGGTGGCGTTTTGCCTCAAAGACCGAAGTACCCACGACGAGTTTGAGGTGTCGGTGATGTTGCGGCGGTTCGGGTGGATTGTGCCGGCGTATCGAATGCCGAAAGATGCCAAGCATGTGTCGGTTCTTCGTGTTGTGGTTAGAGAAGATTTCTCTCGCGCCCTTGCAGAGCGGCTTTTGGTTGATATCATTAAGGTGTTGGCGGAGCTTGATACTCTTCCATCCAAAAATGCTGCGAAAGCCACCGCCTTAGCGAAGGACGAGGATGCAGCGAATGATAGCGCAGTGAAGAAGACGGCAGAGGAGACAGAAATGGAAATTGTGAATGCTTGGATCGACATGATAACAAAGGCTACCAAAATCACTTGTTGCTAA 1500 47.6 MASSNPCSNSHESVHSSPFASRYVQNPTPKFVMPENSMSKEAAAQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMDSINKNYVNMDEYPVTTEIQNRCINMIAHLFNAPLGDSDVAVGAGTVGSSEAIMLAGLAFKRKWQSKRKAEGKAFDKPNLVTGANFHVCWEKFCRYFEVELREVKVREGYYVMDPFEAVEMVDENTICVASIFGSTYNGEFEDVKVLNDLLMKKNKESGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTRQDLPQQLIFHIDYLGADQSTFTLNFSKGSSQVIAQYYQLIRLGFEGYRKVMQNCRDNAMALKEGLQNTGRFTIVSKDIGVPVVAFCLKDRSTHDEFEVSVMLRRFGWIVPAYRMPKDAKHVSVLRVVVREDFSRALAERLLVDIIKVLAELDTLPSKNAAKATALAKDEDAANDSAVKKTAEETEMEIVNAWIDMITKATKITCC 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4415249 4418100 - CmaCh15G008720.1 Cma15g00872 310022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00872 499 PANTHER GLUTAMATE DECARBOXYLASE 3 493 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cma15g00872 499 SUPERFAMILY PLP-dependent transferases 19 445 IPR015424 -
Cma15g00872 499 PANTHER GLUTAMATE DECARBOXYLASE 3 493 - -
Cma15g00872 499 MobiDBLite consensus disorder prediction 1 21 - -
Cma15g00872 499 Gene3D - 67 361 IPR015421 GO:0003824
Cma15g00872 499 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 18 445 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cma15g00872 499 Gene3D - 362 449 - -
Cma15g00872 499 Pfam Pyridoxal-dependent decarboxylase conserved domain 34 382 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cma15g00872 499 Gene3D - 3 66 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02275 Cma-Chr4:15881579 Cma15g00872 Cma-Chr15:4415249 0 dispersed
Cma04g02443 Cma-Chr4:16818896 Cma15g00872 Cma-Chr15:4415249 4.92E-09 dispersed
Cma08g00167 Cma-Chr8:911772 Cma15g00872 Cma-Chr15:4415249 1.83E-18 dispersed
Cma15g00602 Cma-Chr15:2851587 Cma15g00872 Cma-Chr15:4415249 3.22E-08 dispersed
Cma15g00762 Cma-Chr15:3725168 Cma15g00872 Cma-Chr15:4415249 0 dispersed
Cma15g00872 Cma-Chr15:4415249 Cma15g00874 Cma-Chr15:4426977 2.88E-53 proximal
Cma15g00872 Cma-Chr15:4415249 Cma15g00873 Cma-Chr15:4426600 4.76E-45 tandem
Cma15g00872 Cma-Chr15:4415249 Cma04g02158 Cma-Chr4:15139593 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00872 K01580 - csv:101208026 818.15