Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00873 ATGGTGATGTCCAAAGCATTCTCTGAATCTGATGTTTCTATACATTCCACATTCGCCTCCCGCTATGTCCGGGACTCTTCTCCTCGGTTCACCATCCCCCAAAACTCCATGTCCAAGGAGGCCGCCTTTCAGATCATCAACGACGAGCTCATGCTGGACGGCAACCCACGCCTCAATTTGGCATCCTTCGTCACCACATGGATGGAGCCCGAATGCGACAAGCTCATCATGGACTCAATCAATAAAAACTACGTCAACATGGACGAGTACCCTGTCGCCACCGGTGCATCAACATGA 297 51.18 MVMSKAFSESDVSIHSTFASRYVRDSSPRFTIPQNSMSKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMDSINKNYVNMDEYPVATGAST 98
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4426600 4426896 + CmaCh15G008730.1 Cma15g00873 310023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00873 98 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 94 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cma15g00873 98 PANTHER GLUTAMATE DECARBOXYLASE 1 94 - -
Cma15g00873 98 SUPERFAMILY PLP-dependent transferases 15 94 IPR015424 -
Cma15g00873 98 Gene3D - 1 65 - -
Cma15g00873 98 PANTHER GLUTAMATE DECARBOXYLASE 1 94 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02159 Cma15g00873 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00872 Cma-Chr15:4415249 Cma15g00873 Cma-Chr15:4426600 4.76E-45 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00873 K01580 - csv:101208026 177.563