Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma15g00874 | ATGCTGGCAGGGCTTGCCTTCAAGAGGAAGTGGCAGAGCAAGCGGAAGGGTGAAGGGAAGCCTTATGACAAGCCTAATCTTGTGACGGGTGCCAATGTCCAAGTGTGCTGGGAGAAATTTGGTAGCCATTTGGGGTCCACTTATAATGGTGAATTCGAGGATGTGAAGCTGCTGAACGATTTGTTGATGAAGAAGAATAAGGAAAATGGATGGGATACGGCGATTCATGTGGATGCGGCCAGCGGTGGGTTCATAGCGCCGTTTTTGTATCCAGAGCTGGAATGGGACTTCCGGCTTCCTTTGGGATACCGCAATGTGATGCAAAATTGTCACGACAATGCAATGGTGTTGAAGGAAGGGCTGGAGAACACAGGGAGATTCAGCATAGCATCGAAGGACATTGGAGTCCCCGTGGTGGCGTTCAGTCTCAAAGACAGAACTCGCCACGACGAATTCGAGGTGTCAGAAATGTTACGACGGTTCGGGTGGATGTTGCCGGCGTATCAAATGCCAGAGGGGGCCAAGCATGTGTCAGTTCTTCGTGTGGTGATTAGAGAAGATTTCTCTCGCACCCTTGCGGGGCGTCTTGTGCAGGACATCGTGAAGGTTCTGGGAGAGCTAGACAGTCTTCCACCAAATAAGAACATGGGTGCACCGCAG | 660 | 51.21 | MLAGLAFKRKWQSKRKGEGKPYDKPNLVTGANVQVCWEKFGSHLGSTYNGEFEDVKLLNDLLMKKNKENGWDTAIHVDAASGGFIAPFLYPELEWDFRLPLGYRNVMQNCHDNAMVLKEGLENTGRFSIASKDIGVPVVAFSLKDRTRHDEFEVSEMLRRFGWMLPAYQMPEGAKHVSVLRVVIREDFSRTLAGRLVQDIVKVLGELDSLPPNKNMGAPQ | 220 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 4426977 | 4428888 | + | CmaCh15G008740.1 | Cma15g00874 | 310024 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma15g00874 | 220 | Pfam | Pyridoxal-dependent decarboxylase conserved domain | 43 | 100 | IPR002129 | GO:0016830|GO:0019752|GO:0030170 | |
Cma15g00874 | 220 | Pfam | Pyridoxal-dependent decarboxylase conserved domain | 1 | 42 | IPR002129 | GO:0016830|GO:0019752|GO:0030170 | |
Cma15g00874 | 220 | Gene3D | - | 41 | 101 | IPR015421 | GO:0003824 | |
Cma15g00874 | 220 | SUPERFAMILY | PLP-dependent transferases | 1 | 207 | IPR015424 | - | |
Cma15g00874 | 220 | PANTHER | GLUTAMATE DECARBOXYLASE | 44 | 101 | IPR010107 | GO:0004351|GO:0006536|GO:0030170 | |
Cma15g00874 | 220 | PANTHER | GLUTAMATE DECARBOXYLASE | 1 | 41 | IPR010107 | GO:0004351|GO:0006536|GO:0030170 | |
Cma15g00874 | 220 | PANTHER | GLUTAMATE DECARBOXYLASE | 102 | 215 | IPR010107 | GO:0004351|GO:0006536|GO:0030170 | |
Cma15g00874 | 220 | Gene3D | - | 124 | 211 | - | - | |
Cma15g00874 | 220 | PANTHER | GLUTAMATE DECARBOXYLASE | 44 | 101 | - | - | |
Cma15g00874 | 220 | PANTHER | GLUTAMATE DECARBOXYLASE | 1 | 41 | - | - | |
Cma15g00874 | 220 | PANTHER | GLUTAMATE DECARBOXYLASE | 102 | 215 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma04g02158 | Cma15g00874 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma15g00872 | Cma-Chr15:4415249 | Cma15g00874 | Cma-Chr15:4426977 | 2.88E-53 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma15g00874 | K01580 | - | csv:101208026 | 206.838 |