Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00874 ATGCTGGCAGGGCTTGCCTTCAAGAGGAAGTGGCAGAGCAAGCGGAAGGGTGAAGGGAAGCCTTATGACAAGCCTAATCTTGTGACGGGTGCCAATGTCCAAGTGTGCTGGGAGAAATTTGGTAGCCATTTGGGGTCCACTTATAATGGTGAATTCGAGGATGTGAAGCTGCTGAACGATTTGTTGATGAAGAAGAATAAGGAAAATGGATGGGATACGGCGATTCATGTGGATGCGGCCAGCGGTGGGTTCATAGCGCCGTTTTTGTATCCAGAGCTGGAATGGGACTTCCGGCTTCCTTTGGGATACCGCAATGTGATGCAAAATTGTCACGACAATGCAATGGTGTTGAAGGAAGGGCTGGAGAACACAGGGAGATTCAGCATAGCATCGAAGGACATTGGAGTCCCCGTGGTGGCGTTCAGTCTCAAAGACAGAACTCGCCACGACGAATTCGAGGTGTCAGAAATGTTACGACGGTTCGGGTGGATGTTGCCGGCGTATCAAATGCCAGAGGGGGCCAAGCATGTGTCAGTTCTTCGTGTGGTGATTAGAGAAGATTTCTCTCGCACCCTTGCGGGGCGTCTTGTGCAGGACATCGTGAAGGTTCTGGGAGAGCTAGACAGTCTTCCACCAAATAAGAACATGGGTGCACCGCAG 660 51.21 MLAGLAFKRKWQSKRKGEGKPYDKPNLVTGANVQVCWEKFGSHLGSTYNGEFEDVKLLNDLLMKKNKENGWDTAIHVDAASGGFIAPFLYPELEWDFRLPLGYRNVMQNCHDNAMVLKEGLENTGRFSIASKDIGVPVVAFSLKDRTRHDEFEVSEMLRRFGWMLPAYQMPEGAKHVSVLRVVIREDFSRTLAGRLVQDIVKVLGELDSLPPNKNMGAPQ 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4426977 4428888 + CmaCh15G008740.1 Cma15g00874 310024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00874 220 Pfam Pyridoxal-dependent decarboxylase conserved domain 43 100 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cma15g00874 220 Pfam Pyridoxal-dependent decarboxylase conserved domain 1 42 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cma15g00874 220 Gene3D - 41 101 IPR015421 GO:0003824
Cma15g00874 220 SUPERFAMILY PLP-dependent transferases 1 207 IPR015424 -
Cma15g00874 220 PANTHER GLUTAMATE DECARBOXYLASE 44 101 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cma15g00874 220 PANTHER GLUTAMATE DECARBOXYLASE 1 41 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cma15g00874 220 PANTHER GLUTAMATE DECARBOXYLASE 102 215 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cma15g00874 220 Gene3D - 124 211 - -
Cma15g00874 220 PANTHER GLUTAMATE DECARBOXYLASE 44 101 - -
Cma15g00874 220 PANTHER GLUTAMATE DECARBOXYLASE 1 41 - -
Cma15g00874 220 PANTHER GLUTAMATE DECARBOXYLASE 102 215 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02158 Cma15g00874 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00872 Cma-Chr15:4415249 Cma15g00874 Cma-Chr15:4426977 2.88E-53 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00874 K01580 - csv:101208026 206.838