Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00875 ATGAGTGGTGGTAGTGAACTTCACTCTCTATCTCTCTTCAATTCCTCGCCCTTGGGTATTGCAGTAATGGATGCCGCCGCCGCCGCCGCCGCCCTGGACTCATCTTTCATGCCGGCGATTTCCACCGGATATTTGGAAGATGCGTTGGTTGACTACAATTCCAAACGACGGCGTTTGGGTCATCATCTTCTTGAATTCGAATTCCCACAGAGGTACTGGAGTTCATTTTGCACATGGGGTGGAGATGCCCTTGAGAGTTTCGATTGGAACAACAACAAAATTGATGATATGAATAATTTTACAGAGGAAGGAATAAGCACTTCGCCCAAAAGCAGAGTCTTCAAAACGCCGCCGGACATGGAACCGTTTTCCACTCCAAATTCCTCTTCTTCGTCCTCCTGTAAACATCCAGTTCATCCAGAGCTCTCCGGTCATAAAGATTCCATTTTCTCCGCAGGGAGTGGAAGTGAAAGGAAGAAGAGGAAGGTGGTGTATCCATTTGCATTAGTGAAGCCAGGAGGAGTAGAAGGGGATATAACCTTAAACGACATAAACAAGAAGATGTTAATGCCTCCGACACGGGCGGTCCGACACCCGGTGGGGGATTTTGCGTGTCGGCCGTACGTAACGGCGGAGGGACGGGGTCTGTCCGGCAAAGCTGTGGTGACATTGACGAAAATCCATACTCAAGGAAGGAGAGGGAGCATCACCATAATCAGAACAAAGGGTTGA 732 49.04 MSGGSELHSLSLFNSSPLGIAVMDAAAAAAALDSSFMPAISTGYLEDALVDYNSKRRRLGHHLLEFEFPQRYWSSFCTWGGDALESFDWNNNKIDDMNNFTEEGISTSPKSRVFKTPPDMEPFSTPNSSSSSSCKHPVHPELSGHKDSIFSAGSGSERKKRKVVYPFALVKPGGVEGDITLNDINKKMLMPPTRAVRHPVGDFACRPYVTAEGRGLSGKAVVTLTKIHTQGRRGSITIIRTKG 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4431177 4432319 + CmaCh15G008750.1 Cma15g00875 310025

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00875 243 MobiDBLite consensus disorder prediction 100 154 - -
Cma15g00875 243 PANTHER XRI1-LIKE PROTEIN 21 243 - -
Cma15g00875 243 MobiDBLite consensus disorder prediction 121 137 - -
Cma15g00875 243 PANTHER PROTEIN XRI1 21 243 IPR039933 GO:0007140|GO:0007143
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00875 - - - cpep:111809001 398.282
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g02155 Cma15g00875 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01678 Cma-Chr2:9468688 Cma15g00875 Cma-Chr15:4431177 2.46E-18 dispersed
Cma15g00875 Cma-Chr15:4431177 Cma19g00164 Cma-Chr19:1090636 1.99E-17 dispersed
Cma15g00875 Cma-Chr15:4431177 Cma04g02155 Cma-Chr4:15130237 8.49E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g570 Blo01g00797 . . . . . . . . . . . . . . . Cpe01g01868 . . . . . . . . . . . . . . . . Cone6ag0329 . . . . . . . . . . Bpe02g01946 Bma01g00511 . . Cmo04g02252 Cmo15g00910 Cma04g02155 Cma15g00875 Car04g02090 Car15g00823 Cpe13g00439 . Bhi12g00995 . . . Hepe02g2581 . Lcy10g1575 Cla01g00671 Cam01g0703 Cec01g0697 Cco01g0724 Clacu01g0691 Cmu01g0666 Cre09g1841 Lsi09g00729 Csa05g01304 Chy09g00461 Cme09g01269
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009291 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 2 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00875 Cma_Chr15 FPKM 0.959544 0.591931 3.190605 2.760194 1.721664 2.393425 1.996623 1.041355 1.371592 1.30343