Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00878 ATGTTGAAACCTTCTTCTTCTTCTTCTTCTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCTCAGCAGCATCCACACCTTATTCTTCTGCTGCCCCTCCTCTTCCTCCTCCTCCTCCTCCTCCCAATTCCGACCATGGCCTCACCACCAAAAGAAAAAGAAGACCCGCCGGCACTCCAGATCCGGATGCTCAAGTCGTTTCCTTATCCCCCAAAACCCTTCTCGAATCCGATCGCTACGTTTGTGAGATATGCAACCAAGGCTTCCAAAGGGATCAGAATCTCCAAATGCACCGCCGCCGCCACAAGGTACCTTGGAAGCTACTCAAGAAGGCAGACACGGTGGATGCCATCAAGAAAAAGGTCTTTGTTTGCCCCGAGCCGACATGTCTCCACCACGACCCTTGCCATGCCCTTGGTGACCTCGTCGGCATCAAAAAACACTTCCGGAGAAAACACAGCAACCAAAAGCACTGGGTTTGTGACAAATGCTCTAAAGCTTATGCTGTTCATTCCGATTTCAAAGCTCACCTCAAAACCTGCGGCACCCGTGGCCATTCCTGTGATTGTGGCCGTGTCTTTTCCAGAGTGGAGAGCTTTATAGAACACCAAGACGCTTGCAATATCCGCCAGATGAGGTCCGATCAGTGGCAGCTCGTGCCATTACCTCTGCCATTACTACAAACCGCTAATCCACTACGAGGGTTTCCAATTTTATCATCAAACAAAGACCATGATCTCAATCTCCATCTCTCTTCTCCAAGCTCAGCCTTTTTGAATCTCTCAATTGGGTCCAACAAGGAGCCCAACGACAAGCGTCAGCTCGAGCTCGCAATCGAGGAGAAAGCATACGCAGACGAAGCAAGACGAGATGCAAAGCGACAAATCGAAATCGCCGAGGTTGAGTTTACCAATGCCAAAATGATAAGGCAGCAAGCTCAAGCGGAATTGGAAAAAGCAAGGATCTTGAAGGAAGAGGCCAGCCGGAAAATGAGCTCCACCATTATGGAAATCACCTGTGAAACTTGTCGGTTACATTTTCACATCAGCTCCGTCGCAGCAGCCGAAGAGACCTCGCTCGCTATCAGCTACATGTCATCTGCTACGACAGAAGGTGACGGAGAATGA 1125 50.22 MLKPSSSSSSAAAAAAAAAASAASTPYSSAAPPLPPPPPPPNSDHGLTTKRKRRPAGTPDPDAQVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKKADTVDAIKKKVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNQKHWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNIRQMRSDQWQLVPLPLPLLQTANPLRGFPILSSNKDHDLNLHLSSPSSAFLNLSIGSNKEPNDKRQLELAIEEKAYADEARRDAKRQIEIAEVEFTNAKMIRQQAQAELEKARILKEEASRKMSSTIMEITCETCRLHFHISSVAAAEETSLAISYMSSATTEGDGE 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4451639 4453460 - CmaCh15G008780.1 Cma15g00878 310028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00878 374 Coils Coil 305 329 - -
Cma15g00878 374 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Cma15g00878 374 Gene3D Classic Zinc Finger 57 123 - -
Cma15g00878 374 PANTHER OS03G0310200 PROTEIN 41 218 IPR039288 GO:0009630
Cma15g00878 374 PANTHER OS03G0310200 PROTEIN 266 374 IPR039288 GO:0009630
Cma15g00878 374 MobiDBLite consensus disorder prediction 29 44 - -
Cma15g00878 374 SUPERFAMILY beta-beta-alpha zinc fingers 78 178 IPR036236 -
Cma15g00878 374 SMART c2h2final6 122 152 IPR013087 -
Cma15g00878 374 SMART c2h2final6 158 185 IPR013087 -
Cma15g00878 374 SMART c2h2final6 79 101 IPR013087 -
Cma15g00878 374 MobiDBLite consensus disorder prediction 1 65 - -
Cma15g00878 374 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 101 IPR013087 -
Cma15g00878 374 Gene3D Classic Zinc Finger 143 217 - -
Cma15g00878 374 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 41 218 - -
Cma15g00878 374 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 266 374 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02152 Cma15g00878 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00972 Cma-Chr13:7575429 Cma15g00878 Cma-Chr15:4451639 1.15E-134 dispersed
Cma15g00878 Cma-Chr15:4451639 Cma18g00089 Cma-Chr18:406361 3.50E-129 dispersed
Cma15g00878 Cma-Chr15:4451639 Cma04g02152 Cma-Chr4:15062482 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36439 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00878 K25871 - csv:101210468 573.163