Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00880 ATGGATGATGATGCATTGAACATGCGCAATTGGGGATATTATGAGCCGTCCTTCAAAGGTCATCTTGGCCTGCAGCTCATGTCCACTATGTCTGAGCGGGATATAAAACACTACTTACCAGGCCGTGATCCTTCTGTTATGGTTAATGCTAATGGATCGTTTCATCCTCGGGATTGCGTCGTTTCTGAAGCACCGGTACATATGAACTATGTGAGGGACAATTGGGGAGGTAACCCCAGAGATAGGTTTCTTAATATGTTACCTGCCAATCACAATTACCCTGTTATTCCAGAGACTTCAGGAGCTCACTCCTTGCAGATCTTGCAACCACCCTCTTCTTCTAGAGATGAAATGGCAGGAAGTAGAGTTGAAGAGCCTCCAGTGAAGAAGGAAGGTGGGAAAGCAAAGAAAAGACAGAGTAATGAGGCTGGCCCCAAAACCCCCAAAGCTAAAAAACCGAGGAAACCAAAAGATACTAGCACTGCTGCTGTGCAGCGTGTGAAACCACCAAAGAAGAACATTGATCTTGTTATAAATGGGATTGATATGGACATTTCAGGTATTCCAATCCCTGTCTGCTCCTGCACTGGAGCTCCTCATCAATGTTACAGATGGGGATGTGGTGGTTGGCAGTCTGCTTGTTGCACTACCAATATATCAACTTATCCTTTGCCCATGAGTGACAAAAGACGTGGTGCGAGGATAGCTGGGAGAAAAATGAGTCAGGGTGCGTTTAAGAAGGTACTCGAGAAACTAGCAGCTGATGGCTATAATTTTGCGAACCCAATCGATTTGAGGACTCACTGGGCGAGACATGGTACCAATAAGTTCGTCACAATCAGGTAG 846 45.63 MDDDALNMRNWGYYEPSFKGHLGLQLMSTMSERDIKHYLPGRDPSVMVNANGSFHPRDCVVSEAPVHMNYVRDNWGGNPRDRFLNMLPANHNYPVIPETSGAHSLQILQPPSSSRDEMAGSRVEEPPVKKEGGKAKKRQSNEAGPKTPKAKKPRKPKDTSTAAVQRVKPPKKNIDLVINGIDMDISGIPIPVCSCTGAPHQCYRWGCGGWQSACCTTNISTYPLPMSDKRRGARIAGRKMSQGAFKKVLEKLAADGYNFANPIDLRTHWARHGTNKFVTIR 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4464667 4468518 + CmaCh15G008800.1 Cma15g00880 310030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00880 281 PANTHER PROTEIN BASIC PENTACYSTEINE1-RELATED 1 281 - -
Cma15g00880 281 MobiDBLite consensus disorder prediction 118 161 - -
Cma15g00880 281 MobiDBLite consensus disorder prediction 106 168 - -
Cma15g00880 281 Pfam GAGA binding protein-like family 1 281 IPR010409 -
Cma15g00880 281 PANTHER - 1 281 IPR010409 -
Cma15g00880 281 SMART GAGA_bind_2 1 281 IPR010409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00880 - - - cmax:111489086 582.793
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g02151 Cma15g00880 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02151 Cma-Chr4:15042263 Cma15g00880 Cma-Chr15:4464667 9.89E-122 dispersed
Cma15g00880 Cma-Chr15:4464667 Cma19g00701 Cma-Chr19:7189965 1.10E-40 dispersed
Cma15g00879 Cma-Chr15:4463790 Cma15g00880 Cma-Chr15:4464667 1.19E-133 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g554 . . . . . . . . . . . . . . . . Cpe01g01864 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g02245 Cmo15g00916 Cma04g02151 Cma15g00880 Car04g02085 Car15g00827 Cpe13g00435 . Bhi12g00980 . . . Hepe02g2589 . . Cla01g00663 Cam01g0694 Cec01g0686 Cco01g0714 Clacu01g0682 Cmu01g0657 Cre09g1849 Lsi09g00717 Csa05g01290 . Cme09g01290
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma15g00880 CST 1 281 BBR/BPC Transcription factor family AT2G01930 54.7 8.6e-81 297.7
Cma04g02151 CST 337 616 BBR/BPC Transcription factor family AT2G01930 53.4 5.2e-78 288.5
Cma15g00879 . 1 278 BBR/BPC Transcription factor family AT2G01930 54.7 3.2e-75 279.3
Cma15g00880 CST 161 281 BBR/BPC Transcription factor family AT2G35550 60.3 8.2e-42 167.9
Cma15g00879 . 159 278 BBR/BPC Transcription factor family AT2G35550 60.8 1.4e-41 167.2
Cma04g02151 CST 162 281 BBR/BPC Transcription factor family AT2G35550 59.2 3.1e-41 166.0
Cma12g00420 . 231 345 BBR/BPC Transcription factor family AT2G35550 57.4 1.6e-37 153.7
Cma11g01067 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 3.6e-37 152.5
Cma19g00701 . 209 315 BBR/BPC Transcription factor family AT2G35550 57.9 1.0e-36 151.0
Cma05g00293 . 230 339 BBR/BPC Transcription factor family AT2G35550 60.0 1.4e-36 150.6
Cma12g00420 . 239 345 BBR/BPC Transcription factor family AT1G68120 57.9 2.5e-37 153.3
Cma11g01067 . 1 313 BBR/BPC Transcription factor family AT2G21240 63.5 1.3e-82 303.9
Cma19g00701 . 1 315 BBR/BPC Transcription factor family AT2G21240 61.4 4.8e-82 302.0
Cma19g00700 . 1 305 BBR/BPC Transcription factor family AT2G21240 60.8 3.9e-76 282.3
Cma05g00293 . 18 339 BBR/BPC Transcription factor family AT2G21240 51.5 1.9e-62 236.9
Cma11g01067 . 1 313 BBR/BPC Transcription factor family AT4G38910 60.1 4.7e-71 265.4
Cma19g00701 . 1 315 BBR/BPC Transcription factor family AT4G38910 58.1 1.6e-66 250.4
Cma19g00700 . 1 305 BBR/BPC Transcription factor family AT4G38910 57.7 1.5e-61 233.8
Cma05g00293 . 18 339 BBR/BPC Transcription factor family AT4G38910 50.6 4.3e-56 215.7
Cma12g00420 . 91 345 BBR/BPC Transcription factor family AT5G42520 63.2 1.2e-82 303.9
Cma05g00293 . 108 339 BBR/BPC Transcription factor family AT5G42520 58.2 1.3e-76 283.9
Cma15g00880 CST 161 281 BBR/BPC Transcription factor family AT2G35550 60.3 8.2e-42 167.9
Cma15g00879 . 159 278 BBR/BPC Transcription factor family AT2G35550 60.8 1.4e-41 167.2
Cma04g02151 CST 162 281 BBR/BPC Transcription factor family AT2G35550 59.2 3.1e-41 166.0
Cma12g00420 . 231 345 BBR/BPC Transcription factor family AT2G35550 57.4 1.6e-37 153.7
Cma11g01067 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 3.6e-37 152.5
Cma19g00701 . 209 315 BBR/BPC Transcription factor family AT2G35550 57.9 1.0e-36 151.0
Cma05g00293 . 230 339 BBR/BPC Transcription factor family AT2G35550 60.0 1.4e-36 150.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002345 4 2 3 4 4 1 2 1 1 0 1 1 3 2 2 4 1 2 2 1 2 2 2 2 1 1 2 5 3 1 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36441 PF06217 GAGA_bind 1.10E-109 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00880 Cma_Chr15 FPKM 25.838591 28.556587 18.026827 17.11194 21.549582 19.834694 21.551304 13.663863 14.525853 14.169137