Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00885 ATGTTCGACGGCAAGGATCTCGCCTCCGATGGCGAGAACTCTCGGACCAAGGGTATTGGTTCTCGGGAGGACTCGAAATTTGCCGGAATCGGGAATTCGGGCTCTCAAGAACTCACTCTTAGCTACCTTTGTGAGAATTCGAAACTGGGTTCTCCTGGCTTTGCGGCTTCCTTCGAGAAAGGAAATTACAAAGGTAAAGAAGTTTTGTTTTCTGAGAATTGTAACGACGATGATAAATGGGTTGAGAGGGATTTCTTGAATTTGAACTCGAATAGGGGAAATCAGTCCAAGCGGGAGGTTGAGGAGGAGATTGATAGGGGGGAGAATCGGGGAAAGAAGCCCAAACTTGAAACTCTTAATCTCTCTTTAGCTTTGCCTGAAGTTTCACTCTCTCTTACTGCCTCGAATGCCTTGCAAAATGAAGATCCTCCCCCTGTTCCGTCCAAGCCCTGTAGGAGCCTCCAATCTTTGGCCCCTTCAATGAACAATACCCAAACTACTTGTTCTAACGATTTCACTGCTGCTTCGCTTTCCTATTCCTACTCCCACCAATTTTCTCACAACCCCAGTTGCTCTTTGACCCGAAATTCGACTGAGAATTTCGAGTATTCTGTTGGGAGAGACGACCATATTTGGAACTGTGGAGAGGGAACTAATGGGTCTGTTCATAGCAGGTTCAAACCACTAGGGGATGGAGTTGCCTTGTCAAATCATGGAGGTGGGCTTAATTCTTTGTCGCAGGGGAATCGCCCTTCCAATAAGGAGGCATGTAATACCTCCAATGATAACTCGTTTTTTCCGTCTGAGCTTCTGGCACGACCGAGAATGGAGGTGAAGTCGGGGAATTCAATTGGAAGGAGATCCGAAAAGTTGGAGGGGGTAGAGGGTAGTTCTAGGCCGGAGAGAATTCTTCGGGAAGTCGTGTCGGAGTCGATCTCAGTCATGTCTCAGATAGTTCAGGAGCTTCCTGATGAAACACTTACATCAATCAAGGATTACTTGAAAGATGTAATTGCCATGCCTGATAAGAGAGATGAGTTATCGTCTCTCCAAAAGCGTCTAGAGCGACGATCCGATCTCAATAAGGAAACTCTCTCAAAGTGTCACAAAGCACAGCTTGAGATTTTAGTTGCAGTGAAGATGGGGCTTGTGAGTTTCATCTCTGGGAAAAGCAGGTGCTCCATTGCTGAGCTTGTGGACATTTTCTTGTTTCTGAAATGCAGGAACTGCAAGAGTGTAATCCCAGTTGATGATTGTGACTGCAAAATCTGCTCAGCCAACAAAGGATTTTGCAGCTCATGCATGTGTCCCATCTGTTTGAACTTTGATTGTGCAAACAATACTTGTAGTTGGGTTGGTTGTGATGTCTGCTCTCATTGGTGCCATGCTGCTTGTGGGATTGAGAAGAATCTCATCAGGCCTGGTCAGAGCCTGAAAGGTCCATCAGGGACGACCGAGATGCAGTTCCATTGCATTGCTTGTAATCATGCTTCAGAGATGTTTGGATTTGTGAAGGATGTTTTCGTGTACTGTGCTAAGAATTGGGGTGTAGAAACCTTGATGAAGGAGCTTGAGTGTGTGAAGAGGATCTTCATTGGAAGTGATGACTACAAAGGCAAGGATTTGTATATTAAAGCAGCTCAGATTCTTGCCAAGCTTGAAAGGAAAGCACTTGCTCCTTGGGAGGCCTGCAATATCATTCTTGATTACTTCAATTATGGCACATCGGAGATTTCAACTTCTGGGGTATTCTCCGAGAAGTTGGGAACAACCAATACAAGCAGCCTGTCGAAAGATGGGATGTCGCTTCCTCAAACCGGCTCCCTACCTTCATCATACGTGATGCAGAAAAATACCCCATCTAGGCCACATCGTGACTTGATATCTGGTGATCTTCGACGCAATGATCTCAAAGTCTCCATTGCCAGCGACTTGAATATAGACGATCAGTTCCAATTTGGGACGTTGACGAAGAAAGAGGGACTTGAAAGCTTGGAAAGCATTGTAAGAATTAAGAATGCGGAAGCGGGAATGTTTCAGAACAAGGCAGATGAGGCACGGAGGGAGGCTGAACGACTGAGACAAATAATCAATGCGAAGTCGGAGAAACTGGATGAAGATTATGCAGAGAAAATCGGGAAGTTGTGCTTGAAAGAGGCGGAAGATAGGCGGAGGAAGAAGGCGGAGGAGGTGAAGGTATTGGAGAACTCTCAAATAGATTATTACAACATGAAGAAGAGAATGCAGAAGGAGATAGCAGGGTTGTTGGAGAGGATGGAAGTGACCAAAAAGCAAGTAGTGTGA 2304 45.62 MFDGKDLASDGENSRTKGIGSREDSKFAGIGNSGSQELTLSYLCENSKLGSPGFAASFEKGNYKGKEVLFSENCNDDDKWVERDFLNLNSNRGNQSKREVEEEIDRGENRGKKPKLETLNLSLALPEVSLSLTASNALQNEDPPPVPSKPCRSLQSLAPSMNNTQTTCSNDFTAASLSYSYSHQFSHNPSCSLTRNSTENFEYSVGRDDHIWNCGEGTNGSVHSRFKPLGDGVALSNHGGGLNSLSQGNRPSNKEACNTSNDNSFFPSELLARPRMEVKSGNSIGRRSEKLEGVEGSSRPERILREVVSESISVMSQIVQELPDETLTSIKDYLKDVIAMPDKRDELSSLQKRLERRSDLNKETLSKCHKAQLEILVAVKMGLVSFISGKSRCSIAELVDIFLFLKCRNCKSVIPVDDCDCKICSANKGFCSSCMCPICLNFDCANNTCSWVGCDVCSHWCHAACGIEKNLIRPGQSLKGPSGTTEMQFHCIACNHASEMFGFVKDVFVYCAKNWGVETLMKELECVKRIFIGSDDYKGKDLYIKAAQILAKLERKALAPWEACNIILDYFNYGTSEISTSGVFSEKLGTTNTSSLSKDGMSLPQTGSLPSSYVMQKNTPSRPHRDLISGDLRRNDLKVSIASDLNIDDQFQFGTLTKKEGLESLESIVRIKNAEAGMFQNKADEARREAERLRQIINAKSEKLDEDYAEKIGKLCLKEAEDRRRKKAEEVKVLENSQIDYYNMKKRMQKEIAGLLERMEVTKKQVV 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4506333 4510331 - CmaCh15G008850.1 Cma15g00885 310035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00885 767 CDD PHD_OBE1_like 435 494 - -
Cma15g00885 767 Coils Coil 745 765 - -
Cma15g00885 767 MobiDBLite consensus disorder prediction 276 296 - -
Cma15g00885 767 MobiDBLite consensus disorder prediction 95 115 - -
Cma15g00885 767 Coils Coil 717 737 - -
Cma15g00885 767 MobiDBLite consensus disorder prediction 239 261 - -
Cma15g00885 767 MobiDBLite consensus disorder prediction 592 623 - -
Cma15g00885 767 Pfam PHD - plant homeodomain finger protein 408 529 IPR032881 -
Cma15g00885 767 MobiDBLite consensus disorder prediction 90 115 - -
Cma15g00885 767 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 318 340 IPR004082 -
Cma15g00885 767 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 357 372 IPR004082 -
Cma15g00885 767 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 372 387 IPR004082 -
Cma15g00885 767 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 398 419 IPR004082 -
Cma15g00885 767 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 442 462 IPR004082 -
Cma15g00885 767 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 515 534 IPR004082 -
Cma15g00885 767 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 663 683 IPR004082 -
Cma15g00885 767 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 702 724 IPR004082 -
Cma15g00885 767 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 16 766 IPR004082 -
Cma15g00885 767 PANTHER PROTEIN OBERON 3 16 766 - -
Cma15g00885 767 MobiDBLite consensus disorder prediction 238 261 - -
Cma15g00885 767 Pfam Coiled-coil region of Oberon 638 756 IPR032535 -
Cma15g00885 767 MobiDBLite consensus disorder prediction 1 31 - -
Cma15g00885 767 MobiDBLite consensus disorder prediction 1 22 - -
Cma15g00885 767 MobiDBLite consensus disorder prediction 592 624 - -
Cma15g00885 767 Coils Coil 676 707 - -
Cma15g00885 767 MobiDBLite consensus disorder prediction 280 296 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00885 - - - csv:101209125 1339.32
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g02146 Cma15g00885 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00516 Cma-Chr8:2969308 Cma15g00885 Cma-Chr15:4506333 9.37E-127 dispersed
Cma15g00885 Cma-Chr15:4506333 Cma17g00963 Cma-Chr17:7157849 5.91E-123 dispersed
Cma15g00885 Cma-Chr15:4506333 Cma04g02146 Cma-Chr4:15007461 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g537 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo11g00963 . . . . . . . Cmo04g02238 Cmo15g00924 Cma04g02146 Cma15g00885 Car04g02079 Car15g00832 Cpe13g00430 . Bhi12g00970 . . . . . Lcy10g1592 Cla01g00657 Cam01g0687 Cec01g0679 Cco01g0707 Clacu01g0676 Cmu01g0650 Cre09g1857 Lsi09g00710 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005873 3 1 1 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00885 Cma_Chr15 FPKM 57.035503 64.979233 24.20167 24.47422 21.026243 19.043194 18.647184 23.989269 23.694574 22.828876