Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00887 ATGCAGGTGAGCGATAACTCTGTGGGTTTGAAGTGGAATGAGCAAATGGGAACAACAAAGAAGGGTTACACATTTGTTCAAGCTAACAGGGCTTGGCTTAGAAAGTATCTTCTGTTCTGGATTATGGGGATGGCGTTTATCAGCATGTTAATCTATAATGGCATGGATGCTGATATCAAAGTGAGGAGGAATGAAGTGTTGGGGAGTATGTGTGAGCAGAGGGCAAGGATGTTGCAGGATCAATTCAATGTTAGTGTTAACCATGTTCATGCCTTGGCTGTCCTTGTTTCCACCTTTCATTACTTCAAAAACCCTTCTGCTATTGATCAGGAAACTTTTGCAGAATACACAGCCAGAACTGCTTTTGAACGGCCTCTACTCAGTGGGGTGGCGTATGCACAAAGAGTGATTCATTCGGAGAGGGATATCTTCGAAAAGCAACACGGGTGGATGATAAGAACAATGGAAAAGGAACCTTCGCCCGATCGAGATGAATATGCACCAGTAATATTTTCTCAAGAAACAGTCTCGTATATTGAATCGTTGGATATGATGTCAGGAGAGGAGGACCGGGAAAATATTTTGAGGGCTAGAGCAACAGGAAAGGCTGTCTTAACAAGACCCTTCAGGCTGCTGGGTTCCCATCATCTTGGAGTTGTTTTGACATTTCCTGTTTACAAATTCAAATTGCCATCCATACCGACTGAAGAAGAACGGATAGAAGCAACAGCAGGCTACGTTGGCGGAGCCTTTGATGTTGAGTCACTCGTGGAGAACTTGCTTGGGCAGCTTGCAGGGAATCAGGCCATTTTGGTAAATGTATATGATGTCACGAACTCTTCTGATCTTCTCGTGATGTATGGTCATCAATATCAAGATGGTGACTTGTCGCTTTCACATGAGAGCAGCCTTGATTTCGGAGATCCATTCAGGAAGCATTTGATGATTTGTAGATATCAGCAGAGGGCTCCCACATCCTGGACTGCCCTAACTACTGCATTCTTATTCTTCGTGATCGGTTTGTTAGTTGGATATATTTTGTATGGTGCAGCAACTCACATTGTGAAGGTTGAAGATGATTTTCATGAAATGCAAGTACTGAAAGTTCGAGCGGAGGCTGCCGATGTAGCAAAATCCCAGTTTCTTGCAACTGTTTCTCATGAAATTAGGACACCAATGAATGGCATCCTCGGAATGCTTGCTCTGCTTCTGGATACAGATCTAAGTTCCACACAGAAGGATTATGCTCAAACTGCCCAGGCTTGTGGAAAGGCATTGATAGCATTAATAAATGAGGTTCTTGACCGGGCAAAAATTGAAGCTGGAAAGTTAGAACTGGAAGCAGTTCCATTCGACATTCGATCAATACTTGATGACGTGCTATCTTTATTTTCCGAGAAGTCCAGACAAAAGGGTCTGGAGCTGGCAGTTTTTGTTTCTGATAAAGTTCCAGAAATTGTAATTGGAGATCCTGGAAGATTCAGACAAATTATAACAAATCTTGTGGGTAACTCTGTTAAGTTTACTGAAAGAGGACATATATTTGTTAAAGTACACCTAGCTGAGAATTCAAAAGTCTCCATGGACTCGGAATACGTCAACGGAATATCCGACAGTGGCTTATTCGTATTGGATGGTCGTGAATTTCAAACTTTGAGTGGACGCGAGGCAGCCGATGATCAGAACAGTTGGGATAACTTCAAGCATCTAATCGCTGACGACAACTTCCAGTCGAATGCCGCTTCAAACAACTCAGCAGTTACCAACAAGGGTTGTGATCATGTTACTTTGATGGTAAGTGTGGAGGATACTGGAATTGGGATCCTTTTACATGCCCAAAATCGAGTTTTCACACCCTTCATGCAAGCAGATAGCTCGACCTCCCGAAATTATGGAGGGACTGGTATTGGTTTGAGTATCAGCAAATGTTTAGTTGAGTTAATGGGTGGTCAGATCAACTTCATAAGCCGGCCTCAGATTGGAAGCACGTTTTCCTTCACTGCTGTATTTGGAAAATGTAAGAAAAACTCGATGAATGATATGAAAAAGCCCAACTCTGAAGAACTTCCCCCCAGTTTTAGAGGAATGAAAGCAATAGTAGTTGATAGCAAACATGTACGAGCTTCTGTAACCAGGTATCATTTGAAGAGACTTGGTATCATAGTTGAAGTCACCAATAGCATCAACATGGCAGCTTCTTTATTCAGAGAAAATGGATCCACACTGCCAAGAAACACAATCCTTCCAGATATGATCTTAGTTGAAAAGGACATACTAAATTCTGATGAGGAATGTGGGATCATTCATCATCTGAACTGGAAACCGAACGGTAGTTCGGTTAAGTTTCCAAAGCTGATCCTTCTCGCTACCAATATTGCCACTGCTGAACTAGACAAGGCAAGAGCAGCAGGTTTTGCAGACACCGTGATCATGAAGCCGTTGAGGGCGACTATGGTGGCTGCCTGTCTTCAACAAGTACTCGGGGTTAAGAATCAGAGACGGCCGAATGGTTCTGCTTTCCTCCAGAGCCTTCTCTGTGGCAAGAGAATCTTAATTGTTGATGACAACCGAGTAAACCGTCGGGTCGCTGCAGGCGCTCTGAAGAAATTTGGTGCAGATGTTGAGTGTGCAGATAGCGGGAAATCTGCACTGAAGTTGCTTCAGCTACCGCATAATTTTGATGCTTGCTTCATGGATATTCAAATGCCTGAAATGGATGGGTTTGAGGCGACTCGTCGTATCAGGACAATGGAGGTCGAGGCAAACAAAGGAGGATTGTCTGCAACAGAAGGCAAACGGCCTATACCAATATTAGCAATGACTGCAGACGTGATTCATGCTACGTACGAAGAATGCCTGAAATGCGGTATGAATGGTTACGTCTCGAAACCCTTTGAAGAAGAAAATCTATACAAGGAAGTTGCCCGATTTTTCAAAAAACCATAG 2946 43.25 MQVSDNSVGLKWNEQMGTTKKGYTFVQANRAWLRKYLLFWIMGMAFISMLIYNGMDADIKVRRNEVLGSMCEQRARMLQDQFNVSVNHVHALAVLVSTFHYFKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVIHSERDIFEKQHGWMIRTMEKEPSPDRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKFKLPSIPTEEERIEATAGYVGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDLLVMYGHQYQDGDLSLSHESSLDFGDPFRKHLMICRYQQRAPTSWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQVLKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPEIVIGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAENSKVSMDSEYVNGISDSGLFVLDGREFQTLSGREAADDQNSWDNFKHLIADDNFQSNAASNNSAVTNKGCDHVTLMVSVEDTGIGILLHAQNRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQIGSTFSFTAVFGKCKKNSMNDMKKPNSEELPPSFRGMKAIVVDSKHVRASVTRYHLKRLGIIVEVTNSINMAASLFRENGSTLPRNTILPDMILVEKDILNSDEECGIIHHLNWKPNGSSVKFPKLILLATNIATAELDKARAAGFADTVIMKPLRATMVAACLQQVLGVKNQRRPNGSAFLQSLLCGKRILIVDDNRVNRRVAAGALKKFGADVECADSGKSALKLLQLPHNFDACFMDIQMPEMDGFEATRRIRTMEVEANKGGLSATEGKRPIPILAMTADVIHATYEECLKCGMNGYVSKPFEEENLYKEVARFFKKP 981
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4518099 4523215 + CmaCh15G008870.1 Cma15g00887 310037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00887 981 PANTHER HISTIDINE KINASE 4 19 980 - -
Cma15g00887 981 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 489 669 IPR003594 -
Cma15g00887 981 ProSiteProfiles Histidine kinase domain profile. 384 672 IPR005467 -
Cma15g00887 981 SMART CHASE_2 104 289 IPR006189 -
Cma15g00887 981 Pfam Response regulator receiver domain 850 974 IPR001789 GO:0000160
Cma15g00887 981 SMART REC_2 848 974 IPR001789 GO:0000160
Cma15g00887 981 Gene3D CHASE domain 108 323 IPR042240 -
Cma15g00887 981 Gene3D - 350 440 - -
Cma15g00887 981 Pfam His Kinase A (phospho-acceptor) domain 377 442 IPR003661 GO:0000155|GO:0007165
Cma15g00887 981 CDD HATPase_EvgS-ArcB-TorS-like 494 670 - -
Cma15g00887 981 SUPERFAMILY CheY-like 847 978 IPR011006 -
Cma15g00887 981 Pfam CHASE domain 107 287 IPR006189 -
Cma15g00887 981 Coils Coil 427 447 - -
Cma15g00887 981 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 364 443 IPR036097 GO:0000155|GO:0007165
Cma15g00887 981 Gene3D - 55 107 - -
Cma15g00887 981 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 431 667 IPR036890 -
Cma15g00887 981 ProSiteProfiles Response regulatory domain profile. 697 827 IPR001789 GO:0000160
Cma15g00887 981 CDD REC_hyHK_CKI1_RcsC-like 850 974 - -
Cma15g00887 981 SMART HisKA_10 377 442 IPR003661 GO:0000155|GO:0007165
Cma15g00887 981 SUPERFAMILY CheY-like 692 829 IPR011006 -
Cma15g00887 981 PANTHER TWO-COMPONENT HISTIDINE KINASE 19 980 - -
Cma15g00887 981 Gene3D - 843 980 - -
Cma15g00887 981 SMART HKATPase_4 489 672 IPR003594 -
Cma15g00887 981 ProSiteProfiles CHASE domain profile. 104 316 IPR006189 -
Cma15g00887 981 CDD HisKA 377 438 IPR003661 GO:0000155|GO:0007165
Cma15g00887 981 ProSiteProfiles Response regulatory domain profile. 849 978 IPR001789 GO:0000160
Cma15g00887 981 PRINTS Bacterial sensor protein C-terminal signature 597 611 IPR004358 GO:0016310|GO:0016772
Cma15g00887 981 PRINTS Bacterial sensor protein C-terminal signature 615 625 IPR004358 GO:0016310|GO:0016772
Cma15g00887 981 PRINTS Bacterial sensor protein C-terminal signature 632 650 IPR004358 GO:0016310|GO:0016772
Cma15g00887 981 PRINTS Bacterial sensor protein C-terminal signature 656 669 IPR004358 GO:0016310|GO:0016772
Cma15g00887 981 Gene3D - 441 674 IPR036890 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02142 Cma15g00887 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00887 Cma-Chr15:4518099 Cma17g01443 Cma-Chr17:9486488 0 dispersed
Cma04g00016 Cma-Chr4:74939 Cma15g00887 Cma-Chr15:4518099 0 transposed
Cma15g00887 Cma-Chr15:4518099 Cma04g02142 Cma-Chr4:14984183 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36442 PF02518 HATPase_c 2.40E-31 CL0025 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00887 K14489 - csv:101209777 1737.24