Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00890 ATGGCTCTCCCTCCGGTTGAGCGTATATATGTTGTAGAAAGCAATCTTCGAGAATGGAAGTCCGGAAATTCGAGCTTTAGGGTTCCTCAACCTGTCCCTGTGCTTCGATTCCTTTACGAGCTCTGCTGGACCATGGTCCGAGGTGAATTGCCATTCCCGAAGTGTAAAGCAGCATTGGATTCAGTTGAGTTCTCGGATCAAATGTCTGAGGAGGAGTTAGGATCAACTTTTGCTGATGTCATTACCCAATTGGCCCAAGATATCACATTAGCAGGAGAGTATCGTGCTCGTCTCTTAAAATTGGCTAAGTGGCTTGTTGAATCAGCATTTGTCCCATTGCGGCTTTTTCAGGAGCGGTGTGAGGAAGAATTTCTATGGGAGGCTGAAATGATAAAGATTAAGGCGCAAGAATTGAAAAATAAAGAGGTCAGAGTAAATACTCGTCTTCTATATCAGCAAACGAAGTTTAATCTTCTGCGGGAAGAAAGTGAGGGTTATGCCAAGTTGGTAACACTTCTTTGCCGGGTCACTGACACTTCAAATAATAATTTTTCGGGATCAACAATTGGTATTATAAAGTCATTGATCGGGCATTTTGATCTGGACCCAAACCGTGTTTTTGACATTGTCTTGGAGTGCTTTGAACTTCAGCCAGAAAATAGTGTTTTCGTGGAGCTAATTCCAATATTTCCCAAGTATCATGCTTCACAAATCCTTGGGTTCAAATTTCAATATTATCAGCGTATTGAAGTAAATTCGCCAGTGCCATTTGGGCTCTATAAGCTTGCAGCGTTACTAGTGAAGGAAAAATTTATTGTTCTTGATAGCATATATGCACATCTGCTCCCGAAGGAGGATGAGGCATTTGAACATTATGATTCCTTTTCTTCCAAAAGACTTGATGAGGCTAACAGAATAGGAAAAATAAATCTTGCGGCAACTGGAAAGGACCTAATGGATGACGAGAAGCAAGGAGATGTAAGCATCGATCTTTTTTCTGCTCTTGATATGGAAAGTGAGGCAGTCAATGAAAGGTCTCCAGAGCTGGAAAACAATCAAACATTGGGCTTGCTTACTGGATTTCTTTCTGTGGGTGACTGGTATCATGCACACATACTGTTTGATCGGCTTTCACCTCTCAATCCTGTGGAGCATCTTCCAATTTGTAACAGCTTGTTTAGGCTCATTGAAGAATCAATCTCCTCCGCATATTCTATTGTCCGCCAAAATCCTTATCAGAGCTTGGGGGCATCCTCAGGAACTAGTATTGATACTATAGGCACTACAAGTTTGCCGGTGGGTGGTACTTTTATAGATCTTCCAAGGGAATTATTTCAGATGCTTGCCGCTGCTGGACCTTATCTCTATCGTGATACAATTCTGCTACAGAAGGTTTGTAGAGTGCTGAGAGGTTATTATATGTCGGCTATTGAGTTTGTCAACAGTATGGAAAGTGGTCTGAATCCTGAATTTGGTATCCTAGCTGGAAACCGGGCTCCTCATCTTCACTTAAAGGAAGCAAGGCTGAAGATTGAGGAGGCCTTAGGAACGTGCCTACTTCCTTCTTTACAGTTGATACCTGCCAATCCATCTGTTGGTCAAGGAATATGGGAAGTCATGAACCTTCTTCCATATGAGGTGCGATATCGTTTATATGGTGAATGGGAGAAAGATGATGAGAAGATTCCAATGGTTTTGGCTGCAAGGCAGACGGCAAAGTTGGACACACGAAGGATTTTGAAGCGGTTGGCTAAAGAAAATTTGAAGCAATTGGGTAGGATGGTTGCAAAACTTGCTCATGCGAATCCAATGACTGTCCTTCGTACAATAGTACACCAGATTGAGGCATATAGGGATATGATTACTCCTGTAGTAGATGCATTCAAGTATCTGACTCAGCTTGAGTATGACATATTGGAATATGTTGTGATTGAACGTTTGGCACAAGGAGGGCGTGATAAGTTGAAGGATGATGGCCTTAATCTCTCAGATTGGCTCCAATCATTAGCTTCATTTTGGGGTCACCTGTGTAAGAAGTACCCATCTATGGAACTAAGGGGTTTGTTTCAGTATCTTGTCAATCAGTTAAAAAAAGGCCAAGGAATTGAGCTTGTTCTCCTGCAGGAGCTTGTTCAACAAATGGCTAATGTCCAATACACAGAAAACCTGACTGAGGAACAGTTGGATGCTATGGCAGGAAGTGAGACACTACGTTTTCAGGCAACTTCTTTTGGAGTTGCACGAAATAACAAGGCGTTGATCAAGTCAAGCAACAGACTGCGTGACTCGTTGCTTCCTAAGGATGAACCAAAATTGGCGGTCCCGCTTTTGCTACTTATTGCTCAACACCGTTCAGTGGTTGTTATAAATGCAGATGCTCCTTACATAAAGATGGTCAGTGAGCAGTTTGATCGATGTCATGGAACTCTGCTTCAATATGTGGAATTTCTTAGTAGTGCAGTTACGCCAGCATCTGCTTATGCTCATTTGATTCCCTCACTCAATGAACTTGCCCATCGTTATCACCTAGATCCCGAGGTTGCTTTCCTGATGTATCGGCCAATAATGAGACTATTTAAGTGTCAAGGTGGTTCTGATATCTTCTGGCCACTGGATGGTAATGATGCAAATGTTGCTGGCAATAATTCTGATATGGAACCTGCAGAATGTTCTGCTGATGTCGTTTTGGATCTTGGTTCTTCACAGAAACTTGTGAGGTGGTCAGATCTGCTCGATACTGTAAAGTCTATGTTGCCTCCAAAAGCTTGGAATAGCTTGTCTCCAGATCTCTTTACTACATTTTGGGGTCTCACCCTCTATGATCTTTACGTTCCTCGGAGTAGATATGAAACTGAAATTGCTAAGCAGCATTCTGCTCTTAAAGCTTTAGAAGAGCTTTCTGATAACTCAAGTTCTGCAATCAATAAAAGGAAGAAAGACAAAGAAAGAATTCAAGAATCTCTTGATCGCCTGTCCAGTGAACTTGTTAAGCATGAAGAAAATGTTGCATCAGTTCGTAGACGACTTTCTCGTGAAAAGGATAAATGGTTGAGCTCCTGTCCTGATACTTTGAAAATTAACATGGAGTTCCTTCAGCGTTGTATTTTTCCCCGCTGTACATTCAGCATGCCTGACGCTGTCTACTGTGCTATGTTTGTGCACACTCTTCATTCCCTTGGAACACCATTTTTCAATACAGTCAACCATATTGATGTTTTGATATGTAAAACCTTGCAACCCATGATATGCTGCTGTACGGAATATGAAGCAGGCAGGCTTGGGAGGTTTTTATATGAGACACTAAAGATAGCTTATCATTGGAAGAGTGATGAATCCATTTATGAACGTGAATGTGGAAATATGCCTGGATTTGCTGTCTATTATAGGTATCCAAACAGCCAAAGAGTAACGTACGGCCAGTTCATCAAGGTTCATTGGAAGTGGAGCCAAAGAATTACACGGTTATTGATACAATGCTTGGAATCTACAGAGTACATGGAAATTAGAAATGCTCTTATAATGTTGACAAAAATATCCAATGTGTTTCCCGTCACTAGAAAGAGTGGGATCAACCTTGAGAAACGGGTTGCTAAGATCAAAAGCGATGAAAGAGAAGATCTGAAGGTGTTAGCGACTGGCGTTGCTGCAGCCTTGGCTGCTAGAAAGCCTTCATGGGTTACGGATGAAGAGTTTGGCATGGGTTACCTTGAATTAAAGACTGCACCATCTCTTGCATCAAAGTCTTCGGCCAGTAATTTAGCTGCTAGCCAAAATAATTCCATTTATCCTTCCCAAAATGAACCTGGTGGAGGGAAGACTGCTGCATTAGCCATCCCAAATTCAGATTCTTTAAATATAGGCAAAGACCATTCATTGAGGTCAAGAAGTTCTGATGTGAGAATGGATAAAATAGATGGTTCTTCTGTTCCAAAATCTGAACTCGAGCATGGGAAAATGAAAGGCACGTCATTGAACGGGCCAGATTCCCAGCCACTGGTGCCCTCAACTTCTGTACATTCAGGATCGTTAAGAATGGTGGAAAGTCTGAAACCTGGTGAAGATTTAAGTAGGACTTTGGATGAGGGCTCATCAAAAGTTATTTCAAAGACCTCGTCTGAATCCGAGTTGAGAGTTTCAGCGAAACGATCAGCACCTGCTGGGTCTTTTAATAAAGCACCAAAGCAAGATATCACAAAAGATGAGATTAGAACAGGAAAAGCTGCTAGCAAGAACCCTGGGTCTTCCACAAGTGAAAGGGAGCTTCCAATTCATTCAACAGACGGTGGTAGGCATGGAGGCTCTTCCAATGTACCTTCTTCAGTTATGCCAAACGGTAATACACAAGGTTCGTTAACTAAAGGCTCGTCCTTATCAGTAAAAGCTTTAGATGGTCATACTATTGAATCAAAGGCAGAAAGTGGGGTTGGGAGGACTTCCGATAGTAGGGCTTCATCAGCAAAGGATGATGGCACTGAAGCTCTTGAAGTTGCAAGGTCCTCTTCTTCCAGACTTGCTCATTCTCCCAGGCATGATAATTCGACCAGTGGTTCGAGATCTAGTGATAAGCTGCAGAAAAGAGCTAGTCCTGCAGAAGAACCCGACAGACAAGGTAAACGCCGGAAAGGAGATGGTGAAACTAGAGATGTAGATGGGGATTTTTGTATCTCTGACAAAGATAGATCTATGGATCCACGTTCTGTAGATGCTGATAAACTAGGAACGGATGAACAAGGTGGTTACAGAGGTTCAGACAAGCCTTTGGATAGGACAAAAGATAAAGTAAATGAAAGGTATGATAGGGAATACAGAGACCGGGTAGAGCGCCCTGAAAAGTCCCGTGGAGATGATCCATCAGTAGAAAGAACAAGAGATAGATCAATAGAAAGATATGGAAGAGAACGCTCTGTTGAAAAAGTGGAGAGAGTTTCTGATAGGTATCCTGAAAAGTCTAAGGATGAAAGAAATAAAGATGATAGGAGCAAATTAAGATATACTGATTCAACTATAGAGAAGTCTCACGTTGATGATCGGTTCCACGGACAGAGCTTGCCACCTCCGCCGCCCTTGCCTCTACACATGGTCCCTCAATCTGTTAATAGTGGGAGAAGAGAAGAAGATGCAGATAGGAGGTTTGGAACTACTAGACACACTCGAAGGCTCTCTCCTAGACACGAAGAGAAGGAACGAAGACGATCAGAGGAAAATTTAATTTCACAGGATGATGCAAAACGCAGAAGAGAAGAGGAATTTCGAGAAAGAAAGAGAGAAGAGAGAGAGTTGGGGATGTCATTGAAGGCTGATGACAGGGATAGGGAGAGGGAGAGGGAAAAGGCAAACCTTTTGAAGGAGGACATGGACGGTTCTGCCACCTCCAAGAGGCGAAAACTTAAAAGGGAGCATCTGTCATTAGCTGAGGCCGGTGAGTATTCTCCTGTTGGCCAACCACCTCCTCCGATAGGTGTTGGTGCGTCTCAATCTTATGATGGACGAGAAAGAGGAGACCGGAAGGGAGTAATGATGCAGCGTGCCGGTTACCTGGACGACCCAGGCTTGAGAATTCACGGTAAAGAAGTGGTCAACAAGATGACTAGACGTGAAGCTGATCTAATGTACGACCGAGAATGGGACGATGAGAAAAGAATGAGAGCAGATCAGAAGCGGAGGCATCGGAAATAA 5676 42.81 MALPPVERIYVVESNLREWKSGNSSFRVPQPVPVLRFLYELCWTMVRGELPFPKCKAALDSVEFSDQMSEEELGSTFADVITQLAQDITLAGEYRARLLKLAKWLVESAFVPLRLFQERCEEEFLWEAEMIKIKAQELKNKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRVTDTSNNNFSGSTIGIIKSLIGHFDLDPNRVFDIVLECFELQPENSVFVELIPIFPKYHASQILGFKFQYYQRIEVNSPVPFGLYKLAALLVKEKFIVLDSIYAHLLPKEDEAFEHYDSFSSKRLDEANRIGKINLAATGKDLMDDEKQGDVSIDLFSALDMESEAVNERSPELENNQTLGLLTGFLSVGDWYHAHILFDRLSPLNPVEHLPICNSLFRLIEESISSAYSIVRQNPYQSLGASSGTSIDTIGTTSLPVGGTFIDLPRELFQMLAAAGPYLYRDTILLQKVCRVLRGYYMSAIEFVNSMESGLNPEFGILAGNRAPHLHLKEARLKIEEALGTCLLPSLQLIPANPSVGQGIWEVMNLLPYEVRYRLYGEWEKDDEKIPMVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLAQGGRDKLKDDGLNLSDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELVQQMANVQYTENLTEEQLDAMAGSETLRFQATSFGVARNNKALIKSSNRLRDSLLPKDEPKLAVPLLLLIAQHRSVVVINADAPYIKMVSEQFDRCHGTLLQYVEFLSSAVTPASAYAHLIPSLNELAHRYHLDPEVAFLMYRPIMRLFKCQGGSDIFWPLDGNDANVAGNNSDMEPAECSADVVLDLGSSQKLVRWSDLLDTVKSMLPPKAWNSLSPDLFTTFWGLTLYDLYVPRSRYETEIAKQHSALKALEELSDNSSSAINKRKKDKERIQESLDRLSSELVKHEENVASVRRRLSREKDKWLSSCPDTLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMICCCTEYEAGRLGRFLYETLKIAYHWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFIKVHWKWSQRITRLLIQCLESTEYMEIRNALIMLTKISNVFPVTRKSGINLEKRVAKIKSDEREDLKVLATGVAAALAARKPSWVTDEEFGMGYLELKTAPSLASKSSASNLAASQNNSIYPSQNEPGGGKTAALAIPNSDSLNIGKDHSLRSRSSDVRMDKIDGSSVPKSELEHGKMKGTSLNGPDSQPLVPSTSVHSGSLRMVESLKPGEDLSRTLDEGSSKVISKTSSESELRVSAKRSAPAGSFNKAPKQDITKDEIRTGKAASKNPGSSTSERELPIHSTDGGRHGGSSNVPSSVMPNGNTQGSLTKGSSLSVKALDGHTIESKAESGVGRTSDSRASSAKDDGTEALEVARSSSSRLAHSPRHDNSTSGSRSSDKLQKRASPAEEPDRQGKRRKGDGETRDVDGDFCISDKDRSMDPRSVDADKLGTDEQGGYRGSDKPLDRTKDKVNERYDREYRDRVERPEKSRGDDPSVERTRDRSIERYGRERSVEKVERVSDRYPEKSKDERNKDDRSKLRYTDSTIEKSHVDDRFHGQSLPPPPPLPLHMVPQSVNSGRREEDADRRFGTTRHTRRLSPRHEEKERRRSEENLISQDDAKRRREEEFRERKREERELGMSLKADDRDREREREKANLLKEDMDGSATSKRRKLKREHLSLAEAGEYSPVGQPPPPIGVGASQSYDGRERGDRKGVMMQRAGYLDDPGLRIHGKEVVNKMTRREADLMYDREWDDEKRMRADQKRRHRK 1891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4532496 4567020 + CmaCh15G008900.1 Cma15g00890 310040

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00890 1891 MobiDBLite consensus disorder prediction 1865 1883 - -
Cma15g00890 1891 MobiDBLite consensus disorder prediction 1408 1422 - -
Cma15g00890 1891 Coils Coil 946 966 - -
Cma15g00890 1891 MobiDBLite consensus disorder prediction 1524 1678 - -
Cma15g00890 1891 MobiDBLite consensus disorder prediction 1361 1378 - -
Cma15g00890 1891 MobiDBLite consensus disorder prediction 1865 1891 - -
Cma15g00890 1891 MobiDBLite consensus disorder prediction 1258 1838 - -
Cma15g00890 1891 Coils Coil 1739 1759 - -
Cma15g00890 1891 MobiDBLite consensus disorder prediction 1699 1804 - -
Cma15g00890 1891 MobiDBLite consensus disorder prediction 1323 1343 - -
Cma15g00890 1891 MobiDBLite consensus disorder prediction 1495 1523 - -
Cma15g00890 1891 Coils Coil 974 1015 - -
Cma15g00890 1891 Pfam Transcription factor/nuclear export subunit protein 2 923 1217 IPR021418 -
Cma15g00890 1891 Pfam Transcription- and export-related complex subunit 595 670 IPR021726 -
Cma15g00890 1891 MobiDBLite consensus disorder prediction 1288 1318 - -
Cma15g00890 1891 PANTHER THO COMPLEX SUBUNIT 2 12 1798 - -
Cma15g00890 1891 PANTHER THO2 PROTEIN 12 1798 IPR040007 GO:0000347|GO:0006397|GO:0006406
Cma15g00890 1891 MobiDBLite consensus disorder prediction 1429 1459 - -
Cma15g00890 1891 Pfam THO complex subunit 2 N-terminus 58 414 IPR032302 -
Cma15g00890 1891 Pfam THO complex subunit 2 N-terminus 430 593 IPR032302 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00890 K12879 THOC2; THO complex subunit 2 - csv:101221461 3368.94
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g02138 Cma15g00890 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01389 Cma-Chr1:9839911 Cma15g00890 Cma-Chr15:4532496 3.40E-49 dispersed
Cma04g02139 Cma-Chr4:14950331 Cma15g00890 Cma-Chr15:4532496 0 transposed
Cma04g02140 Cma-Chr4:14973615 Cma15g00890 Cma-Chr15:4532496 4.04E-58 transposed
Cma15g00890 Cma-Chr15:4532496 Cma04g02138 Cma-Chr4:14939546 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g529 . Blo16g00765 . Bda11g00196 Bpe13g00998 . . . . . . . . . . . Cpe01g01856 . . . . . . . . . . . . . . . . . . . Csa05g01969 . . . . . Bda11g00196 . . . Bma06g01140 . Cmo04g02231 Cmo15g00928 Cma04g02138 Cma15g00890 Car04g02075 Car15g00836 Cpe13g00426 . Bhi12g00962 . . . . . Lcy10g1597 Cla01g00652 Cam01g0681 Cec01g0674 Cco01g0701 Clacu01g0669 Cmu01g0642 Cre09g1863 Lsi09g00705 . Chy09g00805 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005299 1 1 2 1 1 1 2 1 1 1 1 1 3 1 1 3 1 2 2 1 2 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00890 Cma_Chr15 FPKM 12.773104 14.128874 16.791498 17.225187 16.778778 14.806565 18.048552 18.618618 17.727861 17.406574