Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00892 ATGTCTTTCGCCGCCACCCCTCTCTCCATCCTCCTCCTCTTCTTCTTCTTCTTCACATCTCCTCTGTCTCCGGCCGCCGCCCAACTGCCGCCGAAACCCACCAATTTCTCCGCCTTCTCGATATCCCAATCCCCATGGCGGCCGACCCAGAATCTCATTCTCTTCTCCCCCAACTCCCTTTTCGCCGCCGGCTTTCAGCCACTACCAAAAAACTCCAATCTCTTCGTCTTCTCTGTTTGGTACTTCAACATCTCAACGGACAACGTCGTCTGGTCAGCCAACCATCTTTCTCCGGTCAACCGCTCAGCGGCTTTGGTCATCACGCGCACCGGCCAGCTCCGTCTCGACGACGGTTCCGGTCGCAATCTCTGGCCTTCCAACAGTAATGTTTCTGCAAATCCAAATTCAACCCAATTAATCCTTCGCAACGATGGTGATTTGATTTACGGCACATGGGAAAGCTTCCAATTCCCCACCAATACTATCTTGCCTAACCAGACATTAAATGGAACCACCATCGTCTCCAACAACGGCAAATATGCGTTTAAGAACTCTGTTAATTTGACGTTTGGTGCAGAAAGGTACTGGACCCCTGGAAACCCATTCCAGATTTTCCTGATCGAAGGTCAAATCATCATAAACAATCAAACCCCAATTTTCCCTTCTGATTTTAACTCGACCCGGCTGCGGAAATTGGTGGTCGACGATGATGGAAACCTCAAGATTTTCAGCTTCAACCCAAATCTCCGGCGGTGGGATGTCGTTTGGCAAGCACATATAGAGTTGTGTGAGATCTTTCATACTTGTGGCCCAAATTCCATCTGTATGAGTACTGGCAGTTACAACTCCACCAACTGTGTCTGTGCTCCCGGATTTATCCCCGATCCTCGCGGCGGAGCACGGCAAGGATGTCACCGGAAACTCAACATGTCAAATACACCCAAGTTTCTTCAACTGGATTTTGTGAGTTTCAGAGGTGGAGTTAAACAAATCTCCCTGCAAACCCCAAATATTTCAGTCTGCCAAGCGAATTGCTTGAAGAATTCCAGCTGCGTGGGCTATACATTCACCTTCGATGGTAGCGCCCAATGTGCGCTTCAGCTTGACATTTTGTCGAACGGGCTGTGGTCCCCAGGGATGAAGATAGCTGCTTTTGTTAAGGTCGACAATTTGGAAACAGATCACTCAAATTTCAACGGAATGATGTATAAACTCCAAACCACATGTCCAGTTCACATAACCATACGGCCGCCGCCAGTGATTAAAGACAACACGACAAGAAACATATTGATAATCAGCACCATATTCATTGCCGAACTAATTTCCGGGGCGGTTTTCTTCTGTGCTTTCTTGAAGAGATTTGTAAAATACAGAGACATGGCTCGCACGCTTGGTCTCGAATCACTTCCCGCCGGCGGGCCAAAGCAGTTCACTTACGCCGAGCTAAAGACGGCCACGAATAACTTCTCGACCTGCATCGGAAGAGGCGGATTCGGCGAAGTCTTCAAAGGAGAGCTACCGGACAAACGCGTGGTCGCCGTTAAGTGCTTGAAAAACGTCGCGGGTGGCGACCGCGACTTTTGGGCGGAGGTAACCATCATCGCTAGGATGCACCATCTGAATCTGCTTCGATTGTGGGGATTCTGCGCGGAAAAGAATAAAAAAATGTTAGTGTACGAACATATTCCCAATGGATCGCTCGACAAATTCCTGTTCCCCAAACCTTTACCCTCCGATTCGGAGAAGAACGAAACAGAGTCGTACGATGAAATCCCCTCGCTGGATTGGAACATCCGGCACCGAATCGTGATTGGGGTAGCGAGAGCAATCGCGTACTTGCACGAGGAATGCCTGGAATGGGTATTGCATCGTGACATAAAACCAGAGAACATTCTTCTGGACAACGATTTTTGCCCCAAATTGTCGGATTTCGGACTGTCTAAACTGAGGCAAAATGAGGAGACGAGGGTGAGCATGTCTCGGATTAGAGGGACGCCGGGTTACGTAGCGCCAGAGCTGGTGAAATTGGGATCGAATTGGATGACGACAAAAGCGGATGTGTACAGTTTTGGAATGGTGTTGTTGGAGATTATGAGTGGGCGGAGGAATTGTGAGATGAAAAGATCGACGGTGGAGAGTGCGGAGTGGTACTTCCCTGGATGGGCGTTCGAGAAGGCGTTCGTGGAGGAGAGGATGGAGGAGATTCTAGACGATCGAATAAGGGATGAGTGGGAGAGTGGAGGGCATTGGGGGATTGTTAATCGTATGATGCAGACGGCGATGTGGTGTCTTCAAAGCCTACCGGAGAAGAGACCGTCGATGGGGGAGGTGGTGAAGATGTTGGAAGGGAAGCTTGAGATTGCTCCTCCTGAAAAGCCCTCCGTTTACTTCTTATTCAACGAGTTAAAATTCATTGCCCACACGATATCCAAGAGTTCGAGTAGAAGCCAAGCACAATCCCTAAGCATCAATCGATGGGTCGAGAACATTTCAAAAGGAAAATTATCAAGCTTAATCGAAAGAAAGCAAATCGAGATAAGGTTGATAGACAATCGAGCACATATAGAAAATGGAACCGAACATGGAAGGCATCATAAATTCATAATTGATACATTCGTATTACAAAAAGATTCGATTCCAAAAGTTTGTGAGCAGAAAGAACAAACACCAGATAAGCACTGCACTGGCCATTGCGTTCAATCGCACAGCCTTTCAATCTCTTCTTTTCTTGTTTTTGTCAATTTCTCGAAGAAAAGACAGCCTAAGAAAAGTGGAATTCATTTGTTTGTGTCCTTTCTTTCCAGTCTCTCCGTTCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAATTGGTGGTTCAACAATGGGGGAAGCTGCTGATTTCACACACTCAAAGAAGCAGAGCCTTCTTCTTCATGAGCATGAGGAGAAGCACTTCATGTCCAGTGATGTTGTTCGCGACATCATTATGGGTGTCTCCGATGGCCTCACCGTCCCCTTTGCCCTCGCAGCGGGACTTTCCGGTGCCGATGTTACCTCCAACATCATCCTCATCGCCGGAATTGCTGAAGTTGCTGCCGGAGCTATCTCCATGGGACTTGGCGGATATCTGGCAGCTGAGAGTGAAGCGGATCATTACACGAGAGAATTGAAGAGGGAAGAAGAAGAGGTGATTGCAGCTCCAGACATAGAGGCTGCTGAGGTGGCAGATATATTGTCACGGTATGGGGTTGAAGCCCATGAGTACGGGCCTGTTGTTGCTGCTCTTAGAAGGAACCCTCAAGCATGGGTTGATTTCATGATGAAATTTGAGTTGGGGTTGGAAAAGCCGGACCCAAAGAGGGCAGTAATAAGTGCCTTGACAATAGCTATGTCTTACGTAATGGGAGGGTTGGTGCCGTTATCGCCTTACATGCTGTTCCCTTCGCCTGCACAAGCTGTGATTGCTTCGGTGGTCGTTACTATATTAGCATTGCTTGTCTTTGGCTTTGCCAAGGGCTATTTCACTGGCAATCGTCCCATAATGAGTGCCCTACAAACTGCCTTAATTGGAGCCCTTGCGTCCGCCGCTGCTTTCCTTATTGCAAAGGCTTTTCGTACCTAA 3612 48.17 MSFAATPLSILLLFFFFFTSPLSPAAAQLPPKPTNFSAFSISQSPWRPTQNLILFSPNSLFAAGFQPLPKNSNLFVFSVWYFNISTDNVVWSANHLSPVNRSAALVITRTGQLRLDDGSGRNLWPSNSNVSANPNSTQLILRNDGDLIYGTWESFQFPTNTILPNQTLNGTTIVSNNGKYAFKNSVNLTFGAERYWTPGNPFQIFLIEGQIIINNQTPIFPSDFNSTRLRKLVVDDDGNLKIFSFNPNLRRWDVVWQAHIELCEIFHTCGPNSICMSTGSYNSTNCVCAPGFIPDPRGGARQGCHRKLNMSNTPKFLQLDFVSFRGGVKQISLQTPNISVCQANCLKNSSCVGYTFTFDGSAQCALQLDILSNGLWSPGMKIAAFVKVDNLETDHSNFNGMMYKLQTTCPVHITIRPPPVIKDNTTRNILIISTIFIAELISGAVFFCAFLKRFVKYRDMARTLGLESLPAGGPKQFTYAELKTATNNFSTCIGRGGFGEVFKGELPDKRVVAVKCLKNVAGGDRDFWAEVTIIARMHHLNLLRLWGFCAEKNKKMLVYEHIPNGSLDKFLFPKPLPSDSEKNETESYDEIPSLDWNIRHRIVIGVARAIAYLHEECLEWVLHRDIKPENILLDNDFCPKLSDFGLSKLRQNEETRVSMSRIRGTPGYVAPELVKLGSNWMTTKADVYSFGMVLLEIMSGRRNCEMKRSTVESAEWYFPGWAFEKAFVEERMEEILDDRIRDEWESGGHWGIVNRMMQTAMWCLQSLPEKRPSMGEVVKMLEGKLEIAPPEKPSVYFLFNELKFIAHTISKSSSRSQAQSLSINRWVENISKGKLSSLIERKQIEIRLIDNRAHIENGTEHGRHHKFIIDTFVLQKDSIPKVCEQKEQTPDKHCTGHCVQSHSLSISSFLVFVNFSKKRQPKKSGIHLFVSFLSSLSVQREREREREREREIIGGSTMGEAADFTHSKKQSLLLHEHEEKHFMSSDVVRDIIMGVSDGLTVPFALAAGLSGADVTSNIILIAGIAEVAAGAISMGLGGYLAAESEADHYTRELKREEEEVIAAPDIEAAEVADILSRYGVEAHEYGPVVAALRRNPQAWVDFMMKFELGLEKPDPKRAVISALTIAMSYVMGGLVPLSPYMLFPSPAQAVIASVVVTILALLVFGFAKGYFTGNRPIMSALQTALIGALASAAAFLIAKAFRT 1203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4570537 4578245 + CmaCh15G008920.1 Cma15g00892 310042

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00892 1203 Pfam Protein kinase domain 492 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma15g00892 1203 Pfam VIT family 988 1198 IPR008217 GO:0005384|GO:0030026
Cma15g00892 1203 Gene3D - 46 161 IPR036426 -
Cma15g00892 1203 Pfam D-mannose binding lectin 89 169 IPR001480 -
Cma15g00892 1203 Coils Coil 1039 1059 - -
Cma15g00892 1203 SUPERFAMILY Protein kinase-like (PK-like) 470 782 IPR011009 -
Cma15g00892 1203 CDD B_lectin 54 158 IPR001480 -
Cma15g00892 1203 ProSiteProfiles PAN/Apple domain profile. 304 395 IPR003609 -
Cma15g00892 1203 CDD CCC1 970 1201 - -
Cma15g00892 1203 PANTHER OS07G0415500 PROTEIN 17 799 - -
Cma15g00892 1203 CDD STKc_IRAK 493 783 - -
Cma15g00892 1203 ProSitePatterns Protein kinases ATP-binding region signature. 493 515 IPR017441 GO:0005524
Cma15g00892 1203 Pfam S-locus glycoprotein domain 224 294 IPR000858 GO:0048544
Cma15g00892 1203 ProSiteProfiles EGF-like domain profile. 259 295 IPR000742 -
Cma15g00892 1203 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 200 IPR036426 -
Cma15g00892 1203 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Cma15g00892 1203 SMART blect_4 50 158 IPR001480 -
Cma15g00892 1203 Gene3D Phosphorylase Kinase; domain 1 457 561 - -
Cma15g00892 1203 ProSiteProfiles Bulb-type lectin domain profile. 45 162 IPR001480 -
Cma15g00892 1203 Gene3D Transferase(Phosphotransferase) domain 1 562 790 - -
Cma15g00892 1203 PANTHER OS10G0101000 PROTEIN 17 799 - -
Cma15g00892 1203 SMART serkin_6 487 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma15g00892 1203 ProSiteProfiles Protein kinase domain profile. 487 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00892 - - - csv:101221701 1343.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01044 Cma-Chr4:5406146 Cma15g00892 Cma-Chr15:4570537 5.97E-118 dispersed
Cma13g01012 Cma-Chr13:7790968 Cma15g00892 Cma-Chr15:4570537 5.43E-72 dispersed
Cma15g00892 Cma-Chr15:4570537 Cma06g00273 Cma-Chr6:1336180 3.03E-105 dispersed
Cma17g00012 Cma-Chr17:56911 Cma15g00892 Cma-Chr15:4570537 5.17E-08 dispersed
Cma15g00892 Cma-Chr15:4570537 Cma15g00893 Cma-Chr15:4578980 2.63E-106 tandem
Cma04g02136 Cma-Chr4:14927726 Cma15g00892 Cma-Chr15:4570537 0 transposed
Cma15g00892 Cma-Chr15:4570537 Cma04g02135 Cma-Chr4:14921759 1.69E-138 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g528 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0729 . . . Csa05g01971 . . . . . . . . . . . . Cmo15g00931 . Cma15g00892 . Car15g00838 Cpe13g00425 . Bhi12g00960 . . . . . Lcy10g1599 Cla01g00650 . . . . . . Lsi09g00703 . Chy09g00808 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003119 0 2 1 0 0 2 2 2 3 2 2 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69156 PF00069 Pkinase 5.90E-44 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00892 Cma_Chr15 FPKM 3.547302 3.587815 2.482198 2.182711 3.302538 4.271286 3.441583 0.329361 0.431708 0.166942