Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00902 ATGCCAGAGCCTCGAGTTTTACAGCTAACGAATCAAAAAAGTTTTGGAAAAAAATCCAAATCGAGACCCGAAGAACCTAAAATGACTCGGAAAATCCGTGTCATCTGCAACGATCCAGACGCAACCGATTCGTCTTCGAGCGAAGATGAGGGTGAAATCGAAACGAAATCTCTCAAATTAAAACGAATCGTTCGAGAAATCCATCTACCCTTGTTCCCTTTTCAGTCCTCTAAATCAATGGACGTAACCACTAGCACTCAGAGTTCTTCACAGGACAGCAACAATGGCAGCAAAAACCCAGAGCTAAAGAGGAAGAGGGGTTTAGGCAGTAAGACCATGCCTAAAACCCTCTCCACCCGAAGAAGCGCCTCCCAATACAGAGGAGTTCGTCAAAGAAAGTGGGGCAAATGGGCCGCCGAAATCCGAGACCCTTTCAAGGGAGCTCGCATTTGGCTCGGGACTTACAACACTGCTGAAGAAGCCTCTCAGGCCTACGAATCAAAACGCCTCGAGTTCGAAAACGCCATGGCGGCCGCCCCCAAAACCAACGTCATCATCACTTCCTCGTCTTCTTCCTCCGATGAGAACGAGGAAGAATCCGGCAGCGCCATCTCTCAAACATCCCCAGCCGCCATTGTTGAAATGGAAACCTCTTCCTCTGTTTTGATAAAAGAGGAGGAAGGGATCGACACCAGTTTGATGAACGAACTCCAAATCCCCAATTTGGGATTCGTGGACGAGGATTTCGAAATCAATTTGGGGCTTCCGGAACTGGACCCCTTTTTCATGAACGACATTGGACTATTGTTTGACGACTTCTCCGGCATGGATGACCTTCAGATTTACGGGTTCGATGAGGATGAACCCAGTTGCTTGCCGGATTGCGATTTCAACGATTTTGGAAACGATGAAATATCCTGTTGGGTTGATGAAGCTTTGAATGTTCCTTGCTCGTGA 957 47.65 MPEPRVLQLTNQKSFGKKSKSRPEEPKMTRKIRVICNDPDATDSSSSEDEGEIETKSLKLKRIVREIHLPLFPFQSSKSMDVTTSTQSSSQDSNNGSKNPELKRKRGLGSKTMPKTLSTRRSASQYRGVRQRKWGKWAAEIRDPFKGARIWLGTYNTAEEASQAYESKRLEFENAMAAAPKTNVIITSSSSSSDENEEESGSAISQTSPAAIVEMETSSSVLIKEEEGIDTSLMNELQIPNLGFVDEDFEINLGLPELDPFFMNDIGLLFDDFSGMDDLQIYGFDEDEPSCLPDCDFNDFGNDEISCWVDEALNVPCS 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4650006 4650962 - CmaCh15G009020.1 Cma15g00902 310052

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00902 318 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 18 317 - -
Cma15g00902 318 MobiDBLite consensus disorder prediction 1 57 - -
Cma15g00902 318 ProSiteProfiles AP2/ERF domain profile. 125 185 IPR001471 GO:0003700|GO:0006355
Cma15g00902 318 MobiDBLite consensus disorder prediction 78 127 - -
Cma15g00902 318 SMART rav1_2 125 179 IPR001471 GO:0003700|GO:0006355
Cma15g00902 318 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Cma15g00902 318 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Cma15g00902 318 PIRSF PTI6 264 302 IPR017392 GO:0003700
Cma15g00902 318 PIRSF PTI6 4 269 IPR017392 GO:0003700
Cma15g00902 318 Pfam AP2 domain 125 174 IPR001471 GO:0003700|GO:0006355
Cma15g00902 318 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 18 317 - -
Cma15g00902 318 SUPERFAMILY DNA-binding domain 124 176 IPR016177 GO:0003677
Cma15g00902 318 Gene3D AP2/ERF domain 124 183 IPR036955 GO:0003700|GO:0006355
Cma15g00902 318 MobiDBLite consensus disorder prediction 187 208 - -
Cma15g00902 318 CDD AP2 124 172 IPR001471 GO:0003700|GO:0006355
Cma15g00902 318 MobiDBLite consensus disorder prediction 17 37 - -
Cma15g00902 318 MobiDBLite consensus disorder prediction 78 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00902 - - - cmo:103488620 489.189
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01516 Cma-Chr4:7672234 Cma15g00902 Cma-Chr15:4650006 4.88E-78 dispersed
Cma06g01263 Cma-Chr6:8398133 Cma15g00902 Cma-Chr15:4650006 7.60E-33 dispersed
Cma14g01877 Cma-Chr14:13297490 Cma15g00902 Cma-Chr15:4650006 1.62E-62 dispersed
Cma15g00902 Cma-Chr15:4650006 Cma18g00039 Cma-Chr18:152596 7.43E-28 dispersed
Cma15g00902 Cma-Chr15:4650006 Cma18g01025 Cma-Chr18:8548170 3.11E-57 wgd
Cma15g00902 Cma-Chr15:4650006 Cma04g02050 Cma-Chr4:13510179 5.81E-162 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g458 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02014 . . . . . . . . . . . . Cmo15g00939 . Cma15g00902 . Car15g00841 Cpe13g00362 . Bhi12g00918 . . . Hepe02g2639 . . Cla01g00619 Cam01g0647 Cec01g0639 Cco01g0665 Clacu01g0635 Cmu01g0608 Cre09g1893 Lsi09g00669 . Chy09g00841 Cme09g01373
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001455 2 2 1 3 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 2 3 5 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36443 PF00847 AP2 4.90E-12 CL0081 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00902 Cma_Chr15 FPKM 19.160919 21.600298 15.976734 16.961081 34.517555 32.78125 35.785431 35.233849 31.4928 34.299625