Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00908 ATGCAGAGCTTTGAAAACCCAGATCAGTTCTATGTCCATTCTTCTTCTTCTTCCGTTGTTCTCTGGGGAGATGACAACGGACGATTCCACACGCGTTTTCTTCCGGATATGGAGCTTCAACAATCCGCTGTTGCTGTTGCTGCTTTTCATCAAGATGATGCTGTTGATTTAAGCCCAAGCTCTGTTTTCGGTTTAAAATCGACCCACAATACAGCTTTTCCAATCCACCTACCGTACGGGAGCACGGATGTGGGTTCAATAGGAGGAACAGGGTATTTAGACACGGGACAGCAATCGATGCGGTTGAACAAGCTGGCTCCGCCGCAGACGATGGCGGCTGGGAGCTTTGAGAACTGGGGCGAGTCAGCCATGGCAGATACTAGCCAACAGACTGACACTTCCACAGACATCGACACCGATGAAAGAAACCAGCTTCAGGTAGTTGCACATGGAACTCTCATGGCGGACTCCATGGGTCAATCCAGAGCTAAATCTGTAGATCAGAAGACGCTTCGTAGGCTTGCTCAGAATCGAGAAGCAGCCCGGAAGAGTCGATTGAGGAAGAAAGCATATGTCCAGCAGCTGGAAAGTAGTCGACAGAGGCTTGCGCAGCTAGAGCAGGAGCTTCATCGAGCACGCCAACAGGGCATGTTTGTGGCTTCTGGGGCTGGAGACCATTGTTTATCAATGACAGGAAATGGTGCCTTGGCGTTCGATCTCGATTATGCACGATGGCTTGATGAGCATCAACGGCTGGTCAATGATCTAAGAGCATCTGCAAATTCTCAATTGGGAGATGAGGAATTGAGATTTCTTGTTGATGGGGTGATGGCACATTATGATGAACTCTTCAGGCTGAAGAGCATAGGCGCCAAGGCCGACGTTTTTCACATTCTTTCAGGCATGTGGAAGACTCCTGCTGAGAGGTGTTTCATGTGGCTGGGAGGATTCCGTTCATCCGAGCTTCTAAAGATAGTTGGGAGCCATTTGGAGCCTCTAACAGAACAGCAGCTGATGGGTATATGCAATTTGCAGCAATCATCCCAACAAGCTGAAGATGCGTTGTCACAAGGGATAGAAGCTTTGCAACAATCTCTTGTAGAAACTGTTTCCACTGCTTCTATAGGTCCAGCCAGTTCAGGGAATGTTGCTGATTACATGGGTCAAATGGCGATCGCAATGAGCAAGCTAACGACCCTCGAGAACTTTCTACATCAGGCTGATCTGTTGAGGCAGCAAACGCTCCAACAGATGCATCGGATATTAACCACTCGTCAAGCTGCACGAGCGCTTCTTGTCATCAGTGATTACATTTCACGTCTTCGAGCTCTCAGTTCTCTATGGTTAGCACGACCAAGAGAGTGA 1365 48.64 MQSFENPDQFYVHSSSSSVVLWGDDNGRFHTRFLPDMELQQSAVAVAAFHQDDAVDLSPSSVFGLKSTHNTAFPIHLPYGSTDVGSIGGTGYLDTGQQSMRLNKLAPPQTMAAGSFENWGESAMADTSQQTDTSTDIDTDERNQLQVVAHGTLMADSMGQSRAKSVDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRQRLAQLEQELHRARQQGMFVASGAGDHCLSMTGNGALAFDLDYARWLDEHQRLVNDLRASANSQLGDEELRFLVDGVMAHYDELFRLKSIGAKADVFHILSGMWKTPAERCFMWLGGFRSSELLKIVGSHLEPLTEQQLMGICNLQQSSQQAEDALSQGIEALQQSLVETVSTASIGPASSGNVADYMGQMAIAMSKLTTLENFLHQADLLRQQTLQQMHRILTTRQAARALLVISDYISRLRALSSLWLARPRE 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4699844 4702993 - CmaCh15G009080.1 Cma15g00908 310058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00908 454 CDD bZIP_HBP1b-like 169 221 - -
Cma15g00908 454 Gene3D - 168 217 - -
Cma15g00908 454 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 167 211 IPR004827 GO:0003700|GO:0006355
Cma15g00908 454 PANTHER TRANSCRIPTION FACTOR TGA9 49 454 - -
Cma15g00908 454 PANTHER TRANSCRIPTION FACTOR PERIANTHIA 49 454 - -
Cma15g00908 454 ProSiteProfiles DOG1 domain profile. 235 451 IPR025422 GO:0006351|GO:0043565
Cma15g00908 454 Coils Coil 188 215 - -
Cma15g00908 454 Pfam Basic region leucine zipper 167 212 IPR004827 GO:0003700|GO:0006355
Cma15g00908 454 SUPERFAMILY Leucine zipper domain 169 212 IPR046347 GO:0003700|GO:0006355
Cma15g00908 454 SMART brlzneu 165 229 IPR004827 GO:0003700|GO:0006355
Cma15g00908 454 Pfam Seed dormancy control 253 326 IPR025422 GO:0006351|GO:0043565
Cma15g00908 454 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 172 187 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00509 Cma-Chr14:2477165 Cma15g00908 Cma-Chr15:4699844 1.67E-159 dispersed
Cma15g00908 Cma-Chr15:4699844 Cma18g00849 Cma-Chr18:7429501 9.76E-139 dispersed
Cma15g00908 Cma-Chr15:4699844 Cma04g02060 Cma-Chr4:13726057 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36444 PF14144 DOG1 3.50E-29 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00908 K14431 - csv:101210308 781.941