Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00910 ATGGTTTACTCCTACAAAATGCAAGAAATTGCATCAACAATGGGTTTCACGCTCTCCGATTTCGCCGATACTTTGGAACAAGAACGCACCAAAGTTCTAATGTTTCAGCGCGAGCTCCCTCTCTGTTTGCAGATCGTTTCCCATGCCATTGATTGCTGCAGGCAGCAGCTATCGGAGACGACGACGGAGAATCGTCAATCCGAGTGCTCCGACCAGACTTCCAGCGACATGGGTCTTGTTCTTGAGGAGTTCATTCCGATTACCAGAAATGGGGTTTTTGATTCTGAACAACCACGACACCTCCATGAAGCTCAAACAGAGAACAACAAGGTTAACGACTCTGATTTAAACAATTTGAATTTGCCTCCCTCCGATTGGCTCAGATCTGCTCAGCTTTGGAATCAGACCTCAGATCCTTCTACTCTGAGTCAGGACACGCCGGAGAACACGAGGGTTGTTGAGGTAAACAGAAATGGAGGTGCTTTCCAGCCATTTCAGAAGGAGAAAACCTGTGGTGGCGGAGGGATGATGTCGTCGTCTTCAGATCCGGTTCCGGCTGCGGAGACGGGGTTAGGCGGAAGCAGCCGACGGGAAGAGAAGGAAGCACAGAATCAGAGGAAACAGAGACGTTGCTGGTCTCCGGAGCTGCACCGGCGGTTCCTTCATGCGCTTCAGCAGCTCGGAGGCTCCCATGTGGCGACGCCGAAGCAAATAAGGGAATTGATGAAGGTGGATGGTCTTACCAACGGCGAAGTCAAAAGTCATCTACAGAAGTATCGTCTGCACACCAAATGTCCGACTCCGACAATCCACAACAACGAGACCGTCCAACCGCCCCAGTTCCTGGTGGTCGGAGGCATATGGGTACCGGCGTCCGACTACGCCACCACTTCCTCCAGAGAAACAGTCAGCGCCGCTACCGCCAACGGAATATATGCACCGGCGGTTGCAACGGCGGCGCCGCAGCCATTACCCAGTACAGTTCAAAAGCCCAAGCCCAGGCCCATGATTCCTTCCTCCTCCTCCGCCGCCGCTGCCGCCGCCGAATGTAATTCTTCTACTACATCTTCCTCTACTCGCACTTCAGTTTCACCTGCTTCTTGA 1104 52.81 MVYSYKMQEIASTMGFTLSDFADTLEQERTKVLMFQRELPLCLQIVSHAIDCCRQQLSETTTENRQSECSDQTSSDMGLVLEEFIPITRNGVFDSEQPRHLHEAQTENNKVNDSDLNNLNLPPSDWLRSAQLWNQTSDPSTLSQDTPENTRVVEVNRNGGAFQPFQKEKTCGGGGMMSSSSDPVPAAETGLGGSSRREEKEAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNGEVKSHLQKYRLHTKCPTPTIHNNETVQPPQFLVVGGIWVPASDYATTSSRETVSAATANGIYAPAVATAAPQPLPSTVQKPKPRPMIPSSSSAAAAAAECNSSTTSSSTRTSVSPAS 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4714619 4716353 - CmaCh15G009100.1 Cma15g00910 310060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00910 367 Gene3D - 206 263 - -
Cma15g00910 367 SUPERFAMILY Homeodomain-like 205 264 IPR009057 -
Cma15g00910 367 Pfam Myb-like DNA-binding domain 209 260 IPR001005 -
Cma15g00910 367 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 18 362 IPR044787 GO:0003700|GO:0006355
Cma15g00910 367 MobiDBLite consensus disorder prediction 319 367 - -
Cma15g00910 367 MobiDBLite consensus disorder prediction 193 210 - -
Cma15g00910 367 MobiDBLite consensus disorder prediction 344 367 - -
Cma15g00910 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 204 264 IPR017930 -
Cma15g00910 367 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 207 262 IPR006447 GO:0003677
Cma15g00910 367 PANTHER TRANSCRIPTION FACTOR HHO2 18 362 - -
Cma15g00910 367 MobiDBLite consensus disorder prediction 163 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01522 Cma-Chr4:7701261 Cma15g00910 Cma-Chr15:4714619 1.01E-88 dispersed
Cma15g00910 Cma-Chr15:4714619 Cma18g01041 Cma-Chr18:8663506 2.42E-79 dispersed
Cma15g00910 Cma-Chr15:4714619 Cma04g02062 Cma-Chr4:13755560 1.64E-165 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36445 PF00249 Myb_DNA-binding 2.60E-06 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00910 - - csv:101210056 520.005