Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00911 ATGCTTGAGAGAAATGTAGTTGCTTGGACTTCCATGATTAGTGGTTACATTTTGTGTAATGATGTGGTGTTTGCTCATCGACTTTTCGACTTGGCGCCAGAACGGGATGTCGTGCTTTGGAACATCATGGTTTCTGGTTATATTGAAATAGGGGATATGGCGGCTGCAAGAAAGCTGTTCGATGCAATGCCATACCGAGATGTGATGTCTTGGAATACAATGTTGAATGGGTATGCAAATAATGGAGACATTGAGGCTTGTGAGCAGATGTTTGAAGAAATGCCTGAGCGGAATGTTTTCTCCTGGAATGGATTGATTGGGGCATATGCTCATAAGAGGTGTTTCTTTGAAGTCTTGGGTTGTTTCAAACGAATGCTAATTGATGGCCTTGTTGTTCCCAATGATGCCACCCTCGTCACTGTGCTGTCCGCTTGTGCAAGATTAGGGGCTCTTGACTTGGGGAAGTGGGTGCATGTATATGCTGCAACAATCGGGTTTAAGGGAAGTATTTATGTTGGAAATGCATTAATAGACATGTATTCAAAATGCGGTGTAATCGAGAATGCAATGGAGGTTTTTGGAAGCATGGATTCAAAAGACGTTATTACTTGGAACTCTGTAATTTGTGGCTTGGCAACTCATGGATGTGGGGCGGATGCATTAAACTTGTTTCACCAGATGAAGATCACTGGCGTGAAGCCTGACGGAATCACTTTCATTGGAGTGCTGTGCTCCTGCACCCATCTTGGGTTAGTTGAAGAAGGCACCTCATATTTCAACTCAATGGTCCACGACTACTCAATTGTGCCTCAGATTGAGCATTATGGTTGTATGGTTGATCTATTTGGGCGAGCTGGACTTTTGGACCGAGCGATCGAGTTCGTGAAGAGGATGCCGATGGAAGCAGATGCTGTCATCTGGGCTGCTCTTCTAGGTGCATGCAGGATTCACAAAAACATTGATCTCGGTGAGTTAGCTCTTCAGAAACTCATTCAGCTTGAACCGAAGAACCCTGCAAACTATGTGATGCTATCAAATATTTATGGAGATGTTGGGAGATGGAAAGACGTTGCCCGGTTGAAGATATTAATGAGGGACACTGGGTCCAAAAAATTGCCCGGATGCAGCTTGATTGAGGTGAATGATAGCGTAGTTGAGTTCTATTCCTTGGATGAGAGGCATTCTCAGAGCGAGGAAATCTATGGTGTGTTGAAGGGATTGATGAAATTGTTAAGATCATTTGGGTATGAACCAAATATTATGGAACTCCTGCAGGGATGA 1281 43.87 MLERNVVAWTSMISGYILCNDVVFAHRLFDLAPERDVVLWNIMVSGYIEIGDMAAARKLFDAMPYRDVMSWNTMLNGYANNGDIEACEQMFEEMPERNVFSWNGLIGAYAHKRCFFEVLGCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGVIENAMEVFGSMDSKDVITWNSVICGLATHGCGADALNLFHQMKITGVKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVHDYSIVPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIHKNIDLGELALQKLIQLEPKNPANYVMLSNIYGDVGRWKDVARLKILMRDTGSKKLPGCSLIEVNDSVVEFYSLDERHSQSEEIYGVLKGLMKLLRSFGYEPNIMELLQG 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4719349 4720629 + CmaCh15G009110.1 Cma15g00911 310061

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00911 426 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 51 95 - -
Cma15g00911 426 TIGRFAM PPR: pentatricopeptide repeat domain 202 235 IPR002885 -
Cma15g00911 426 TIGRFAM PPR: pentatricopeptide repeat domain 38 63 IPR002885 -
Cma15g00911 426 TIGRFAM PPR: pentatricopeptide repeat domain 70 99 IPR002885 -
Cma15g00911 426 TIGRFAM PPR: pentatricopeptide repeat domain 100 134 IPR002885 -
Cma15g00911 426 Gene3D Tetratricopeptide repeat domain 172 400 IPR011990 GO:0005515
Cma15g00911 426 Gene3D Tetratricopeptide repeat domain 67 164 IPR011990 GO:0005515
Cma15g00911 426 Gene3D Tetratricopeptide repeat domain 1 66 IPR011990 GO:0005515
Cma15g00911 426 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 96 420 - -
Cma15g00911 426 Pfam PPR repeat 100 129 IPR002885 -
Cma15g00911 426 Pfam PPR repeat 274 299 IPR002885 -
Cma15g00911 426 Pfam PPR repeat 38 66 IPR002885 -
Cma15g00911 426 Pfam PPR repeat 7 34 IPR002885 -
Cma15g00911 426 Pfam PPR repeat 70 99 IPR002885 -
Cma15g00911 426 Pfam PPR repeat family 199 246 IPR002885 -
Cma15g00911 426 SUPERFAMILY TPR-like 81 355 IPR011990 GO:0005515
Cma15g00911 426 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 51 95 - -
Cma15g00911 426 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 96 420 - -
Cma15g00911 426 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 4 64 - -
Cma15g00911 426 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Cma15g00911 426 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 36 66 IPR002885 -
Cma15g00911 426 Pfam E motif 317 379 IPR046848 -
Cma15g00911 426 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 67 101 IPR002885 -
Cma15g00911 426 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 64 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00911 - - - csv:101211326 811.216
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00911 Cma-Chr15:4719349 Cma10g00565 Cma-Chr10:2591943 5.85E-08 dispersed
Cma15g00911 Cma-Chr15:4719349 Cma14g02023 Cma-Chr14:14138181 3.48E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g318 . . . Bda11g01155 Bpe13g01353 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01155 . . . Bma06g00752 . . Cmo15g00949 . Cma15g00911 . Car15g00855 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013696 1 1 0 1 1 1 1 1 0 1 1 1 1 2 0 1 0 0 0 1 1 1 1 0 1 1 1 1 1 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00911 Cma_Chr15 FPKM 2.627635 3.145391 1.823592 1.434127 2.087152 3.07036 2.272412 1.951692 1.919327 1.609513