Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00915 ATGGGTTACAATGATTTAGAGATGATAAGTAACCATTTCACAGTCGAGAGCTCGAATGAAAGTGATCATTATCAAGGAACAATTATGAGCTCGGCTAACCCTTTTTTCACTGACACCTTTTGTTTTGAAAAGTTTGATCATTTTAATGAAATCCCGAGCTGTGTTGCCCCAGCTACTGCTCTTTGCTCCTCCGCGCCTGCAAATTACTCTTCGTTTCCTGCATTTAACACAGAAGGTTCCAAGAGCTCGGGAGGAAGAAAGAGGAAAAGGGAAAATGAACGGGATGAGGAGAAGCCTAAAGGAGTGATTCATGTGAGAGCAAAACGAGGCCAAGCTACCGATAGTCACAGCTTAGCGGAAAGGGTAAGAAGACAGAAAATAAACCAGAGGCTGAGATTCTTACAGGACTTGGTTCCAGGATGCTACAAGACAATGGGAATGGCAGTCATGTTAGATGTGATCATAAACTACATCCAATCTCTGCAGAATCAAATAGAGTTCCTCTCAATGAAGCTCTCCGTTGCTAGTCGCTACTATGACTTCAACAACAGCTCCGAGACTGATGAGATTGAGATAATGCAGGCAACAAATGGGTGTGATTACATGGAAGAGATGGGCGGGAGGGTTGTAGTTAGAGAAGAAGAAGGGAATGGAGGGTCCTTTTACCACCACTCTACTTTGCCACCTCTCTAA 693 43.72 MGYNDLEMISNHFTVESSNESDHYQGTIMSSANPFFTDTFCFEKFDHFNEIPSCVAPATALCSSAPANYSSFPAFNTEGSKSSGGRKRKRENERDEEKPKGVIHVRAKRGQATDSHSLAERVRRQKINQRLRFLQDLVPGCYKTMGMAVMLDVIINYIQSLQNQIEFLSMKLSVASRYYDFNNSSETDEIEIMQATNGCDYMEEMGGRVVVREEEGNGGSFYHHSTLPPL 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4738386 4740362 - CmaCh15G009150.1 Cma15g00915 310065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00915 230 Gene3D - 108 179 IPR036638 GO:0046983
Cma15g00915 230 CDD bHLH_AtBPE_like 101 185 - -
Cma15g00915 230 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 111 161 IPR011598 GO:0046983
Cma15g00915 230 PANTHER TRANSCRIPTION FACTOR BHLH75 41 206 - -
Cma15g00915 230 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 41 206 IPR024097 GO:0006355
Cma15g00915 230 MobiDBLite consensus disorder prediction 76 100 - -
Cma15g00915 230 MobiDBLite consensus disorder prediction 82 100 - -
Cma15g00915 230 Pfam Helix-loop-helix DNA-binding domain 115 162 IPR011598 GO:0046983
Cma15g00915 230 SMART finulus 117 167 IPR011598 GO:0046983
Cma15g00915 230 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 109 180 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00279 Cma-Chr11:1389994 Cma15g00915 Cma-Chr15:4738386 7.11E-48 dispersed
Cma14g00817 Cma-Chr14:4127961 Cma15g00915 Cma-Chr15:4738386 4.77E-42 dispersed
Cma15g00915 Cma-Chr15:4738386 Cma18g00043 Cma-Chr18:174590 9.93E-48 dispersed
Cma15g00915 Cma-Chr15:4738386 Cma13g01023 Cma-Chr13:7841204 2.09E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36446 PF00010 HLH 4.50E-06 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00915 - - cpep:111809259 405.986