Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00916 ATGACGGTGAAAAACGAGAATCTCGACAAGGACAAGTTGCTGGAGCAGTTTCTGAGAATCGGATTGGATGAGCGTACTGCACGAAACACCGTTGCCAACAATAAGGTCACTGCCAATCTCAATGCCGTTATTCATGAGGCTGGCGTGCTTGAAGGATGCGATAAGGCTGTTGGAAATCTATTGTATACTGTTGCGACAAAGTATCCTTCAAATGCACTTGTTCATCGACCAATATTGCTGAAATATGTGACCTCAAATAAGATAAAGATGCCGGCTCAATTGGAAGCGGCATTTTCATTTTTTTCTGCTGCAGGTCAAGAAGATATTAAATTAAATGAATTTGAAGATAAATGTGGTGTTGGTGTAGAAGTTTCAGTTGAAGAAATTGAGAAGACTGTGAATGAGGTTTTTGAAGAACATAAAAATGAAATTCTGGAGCAACGTTATCGAACGAATGTGGGTGATTTGTTTGGGCAGGTACGGAAGAAGCATCCTTGGGCTGATCCAAAGATTGTAAAGCAATATATTGATTCCAAATTATTTGAATTACTCGGTGAAAGGACTGCAGCAGATAATGAAAAGATAGTGAAAAAGAAAAAAGAGAAGCCTGCTAAAGTAGACGATAAATCTGTTGCTATTGTTTCAGTGGAACAGCCTCCATCTGAGGAAGATCTTAACCCATATTTAATATTCCCCCGGCCAGAGGATAATTATAAGGTTCATACTGAAGTATTTTTCAGTAATGGAACTATCCTAAGATGTTGCAACACCAAGGAGCTGCTTGAAAAGCACCTAAAAGCAACAGGGGGAAGAGTTTTTACTCGCTTTCCTCCTGAACCAAATGGTTATCTTCATATTGGTCATGCCAAGGCAATGTTTGTTGATTTTGGCCTGGCAAAAGAGCGAGGTGGAGGTTGTTATTTGAGGTATGACGACACGAATCCAGAAGCTGAGAAGAAGGAATATATTGATCATATAGAAGAGATTGTCAAGTGGATGGGTTGGGAGCCTTTCAAGATTACTTATACTAGTGATTACTTCCAAGATCTGTATGAGCTAGCTGTGGAGCTCATACGTAGGGGTCATGCTTATGTGGATCACCAGACTCCTGACGAAATAAAGGAGTACAGAGAGAAAAAGATGAATAGTCCCTGGAGGGATAGGCCTGTGGCTGAGTCATTGAAATTGTTTGACGAAATGAAGCAAGGTCTGATTGAGGAAGGCAAGGCGACTCTTAGAATGAAACAAGACATGCAGAGTGATAATTTTAATATGTATGATCTTATTGCATATCGTATTAAGTTTACTCCTCATCCACATGCTGGAGACAAGTGGTGTATTTATCCAAGCTACGATTATGCACACTGCACCGTGGATTCTCTTGAGAATATAACACATTCGCTGTGTACCTTGGAATTTGAAACACGTCGTGCTTCATACTATTGGTTATTGCATGCACTGGACCTTTATCAACCGTATGTGTGGGAATATTCTCGCCTCAATGTTTCAAATAATGTGTTGTCTAAGCGTAAGTTAAATCGACTAGTGACCGAAAAATGGGTTGATGGTTGGGATGATCCTCGCCTATTGACACTTGCTGGTCTTAGGCGCAGAGGTGTTACATCAACTGCAATTAATGCATTTGTTCGAGGAATGGGAATTACAAGAAGTGACTGTTCTTTGATTCAGTTTAATCGTCTTGAATATCACATTAGAGAAGAGCTAAATAAAACTGCTGCACGAGCAATGGTTGTCTTGCAGCCACTTAAGGTTGTTATTACAAACTTAGAAAATGGATCAATTTTGGATCTTGATGCCAAGAAATGGCCTGAAGCTCAAGCAGATGAGGCATCGGCCTTTTATAAGGTTCCCTTTTCCAATATTGTGTACATAGAACAATCAGATTTCCGGTTGAAAGATTCAAAAGATTACTATGGTCTTGCACCTGGAAAGTCTGTCCTTCTGAGGTATGCATATCCTATTAAATGTACGGATGTTATCCTTGCGGATGATAAGGAAACTGTACTTGAGATTCGAGCCGAATATGATGCTTCCAAGAAATCAAAGCCAAAGGGGGTCCTACATTGGGTTGCACAACCTTCCCCAGGAGTTAATCCACTCAATGTAGAAGTTAGATTGTTTGACAAGCTATTCCTTTCTGAGAACCCTGCTGAACTTGATGATTGGCTTGCTGATTTGAACCCACATTCTAAAGTAGTCATCCCAAGTGCATATGCTGTACCAGAACTTAGGAATGCTATTGTTGGGGACACATTCCAATTTGAAAGGCTTGGGTATTTTGCGGTTGATAACGACTCAACTCCTGAGAAACTCGTATTCAATCGGACAGTCACGCTGAGAGATAGCTATAAGAGCAGCAAAAAGAAAGGTGTTTTAGCTGGTAAAGTTATCACTTTAACGATCGTATACGTACCAACTTTACATTTGTCCACCACTCACGTTAATATAGATGTTGTGGCATTCTAA 2487 40.21 MTVKNENLDKDKLLEQFLRIGLDERTARNTVANNKVTANLNAVIHEAGVLEGCDKAVGNLLYTVATKYPSNALVHRPILLKYVTSNKIKMPAQLEAAFSFFSAAGQEDIKLNEFEDKCGVGVEVSVEEIEKTVNEVFEEHKNEILEQRYRTNVGDLFGQVRKKHPWADPKIVKQYIDSKLFELLGERTAADNEKIVKKKKEKPAKVDDKSVAIVSVEQPPSEEDLNPYLIFPRPEDNYKVHTEVFFSNGTILRCCNTKELLEKHLKATGGRVFTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGGCYLRYDDTNPEAEKKEYIDHIEEIVKWMGWEPFKITYTSDYFQDLYELAVELIRRGHAYVDHQTPDEIKEYREKKMNSPWRDRPVAESLKLFDEMKQGLIEEGKATLRMKQDMQSDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCTVDSLENITHSLCTLEFETRRASYYWLLHALDLYQPYVWEYSRLNVSNNVLSKRKLNRLVTEKWVDGWDDPRLLTLAGLRRRGVTSTAINAFVRGMGITRSDCSLIQFNRLEYHIREELNKTAARAMVVLQPLKVVITNLENGSILDLDAKKWPEAQADEASAFYKVPFSNIVYIEQSDFRLKDSKDYYGLAPGKSVLLRYAYPIKCTDVILADDKETVLEIRAEYDASKKSKPKGVLHWVAQPSPGVNPLNVEVRLFDKLFLSENPAELDDWLADLNPHSKVVIPSAYAVPELRNAIVGDTFQFERLGYFAVDNDSTPEKLVFNRTVTLRDSYKSSKKKGVLAGKVITLTIVYVPTLHLSTTHVNIDVVAF 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4743571 4756254 - CmaCh15G009160.1 Cma15g00916 310066

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00916 828 CDD GlnRS_core 271 581 - -
Cma15g00916 828 TIGRFAM glnS: glutamine--tRNA ligase 272 790 IPR004514 GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425
Cma15g00916 828 Gene3D Ribosomal Protein L25; Chain P 583 702 IPR020056 -
Cma15g00916 828 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 172 249 IPR007638 GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425
Cma15g00916 828 SUPERFAMILY Ribosomal protein L25-like 579 789 IPR011035 GO:0006412
Cma15g00916 828 Gene3D - 123 192 IPR042559 -
Cma15g00916 828 PANTHER GLUTAMINE-TRNA LIGASE 12 791 - -
Cma15g00916 828 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 278 289 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cma15g00916 828 Gene3D - 8 122 IPR042558 -
Cma15g00916 828 Pfam tRNA synthetases class I (E and Q), catalytic domain 272 576 IPR020058 GO:0004812|GO:0005524|GO:0043039
Cma15g00916 828 PANTHER OS05G0182800 PROTEIN 12 791 - -
Cma15g00916 828 Gene3D HUPs 244 582 IPR014729 -
Cma15g00916 828 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 12 169 IPR007639 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Cma15g00916 828 Gene3D Ribosomal Protein L25; Chain P 703 788 IPR020056 -
Cma15g00916 828 SUPERFAMILY Nucleotidylyl transferase 272 585 - -
Cma15g00916 828 Pfam tRNA synthetases class I (E and Q), anti-codon binding domain 579 770 IPR020059 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Cma15g00916 828 PRINTS Glutamyl-tRNA synthetase signature 275 287 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Cma15g00916 828 PRINTS Glutamyl-tRNA synthetase signature 304 317 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Cma15g00916 828 PRINTS Glutamyl-tRNA synthetase signature 449 459 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00916 K01886 QARS, glnS; glutaminyl-tRNA synthetase [EC:6.1.1.18] - csv:101210547 1531.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01169 Cma-Chr11:6813231 Cma15g00916 Cma-Chr15:4743571 5.99E-69 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g328 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0820 Cone19ag0826 . . . . . . . . . . . . . . . . Cmo15g00955 . Cma15g00916 . Car15g00859 Cpe13g00403 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002630 2 4 2 3 2 2 1 2 2 2 2 2 1 2 2 1 2 2 1 2 2 1 1 2 2 2 3 2 2 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00916 Cma_Chr15 FPKM 34.068268 37.04858 44.615791 45.860519 46.714226 43.220657 46.229977 51.399681 48.960789 52.854839