Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00924 ATGTGTTTTTTGAGCTCTGAAACCAGAGATCTGGAAGTGGTGGAGAGCAAGATGAGTGGCGGTGGCAGTAGCACTTCTCGAAGCACTAGGGATTTGATCTGCCATGCCGGTGCTGGTGCTGCTGCAGGTGCTATAGCAGCCACGTTCGTCTGCCCTTTAGATGTGATCAAGACGAGGCTGCAAGTGCATGGTCTTCCATCTGGTCAAAGAGGAGGTAGTATTATTGTCACTAGCCTACAAGACATAATGCGTTCTGAAGGTTTCAGGGGACTGTACCGTGGCCTTTCACCAACAATATTAGCCCTTCTTCCAAACTGGGCTGTCTACTTCACAGTTTATGAGCATCTAAAAGGCGTACTTCATTCAGATGGAGACGATGGTCATCAACTCTCATTCGGCGCAAATATGGTTGCTGCTGCTGGGGCTGGGGGATCTACTGCCATTGCAACAAATCCTTTATGGGTTGTTAAGACCAGACTCCAAACACAGGGAATGAGGCCTGGTGTGGTTCCTTACACAGGCATGGTTTCAGCATTTACCAGGATCATACAGGAAGAAGGAATTCGCGGGCTTTACAGTGGTATCCTCCCTTCATTGGTTGGGATAAGTCATGTTGCCATTCAATTTCCAGCATACGAAAAGCTCAAATCATATATGGCAAAAAGAGATAACACAACCATTGAAAAGCTAACTCCAGGACATTTAGCTATTGCCTCGTCATTGTCAAAAGTTATGGCCTCGGTAACGACTTACCCACATGAGCAAGGCCAAGCCAGAAATGTTGCTCCTCAATACTCAGGCGTACTGGACTGTATCAAAAAGGTTTTTCAAAAGGAAGGTCTTCCCGGTTTTTACAGGGGTTGTGCAACAAATCTTTTACGAACGACTCCATCCGCTGTAATAACTTTCACCAGCTATGAGATGATACATAGGTTTCTACTGCAATTTATACCTCAAGGCGAGGAGAAACCTTCCCCCCATCTGAATTCGAATAGCAATAGCCATGTGAAGCCCCAAAAGGCGAACCGAGACAACTCGAAGGAAGAGAGTGATTCCAGCTTACAACAATCACAATCCCAGCCAAGTAAGCAAACTAGAATTCCTCTGGGGAACAAAGAACAGTTAGCATCTAGACACTGA 1140 45.96 MCFLSSETRDLEVVESKMSGGGSSTSRSTRDLICHAGAGAAAGAIAATFVCPLDVIKTRLQVHGLPSGQRGGSIIVTSLQDIMRSEGFRGLYRGLSPTILALLPNWAVYFTVYEHLKGVLHSDGDDGHQLSFGANMVAAAGAGGSTAIATNPLWVVKTRLQTQGMRPGVVPYTGMVSAFTRIIQEEGIRGLYSGILPSLVGISHVAIQFPAYEKLKSYMAKRDNTTIEKLTPGHLAIASSLSKVMASVTTYPHEQGQARNVAPQYSGVLDCIKKVFQKEGLPGFYRGCATNLLRTTPSAVITFTSYEMIHRFLLQFIPQGEEKPSPHLNSNSNSHVKPQKANRDNSKEESDSSLQQSQSQPSKQTRIPLGNKEQLASRH 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4852185 4855961 + CmaCh15G009240.1 Cma15g00924 310074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00924 379 Pfam Mitochondrial carrier protein 233 314 IPR018108 -
Cma15g00924 379 Pfam Mitochondrial carrier protein 129 222 IPR018108 -
Cma15g00924 379 Pfam Mitochondrial carrier protein 35 121 IPR018108 -
Cma15g00924 379 PRINTS Mitochondrial carrier protein signature 239 261 IPR002067 GO:0055085
Cma15g00924 379 PRINTS Mitochondrial carrier protein signature 35 48 IPR002067 GO:0055085
Cma15g00924 379 PRINTS Mitochondrial carrier protein signature 48 62 IPR002067 GO:0055085
Cma15g00924 379 PRINTS Mitochondrial carrier protein signature 145 163 IPR002067 GO:0055085
Cma15g00924 379 PRINTS Mitochondrial carrier protein signature 192 210 IPR002067 GO:0055085
Cma15g00924 379 PRINTS Mitochondrial carrier protein signature 94 114 IPR002067 GO:0055085
Cma15g00924 379 SUPERFAMILY Mitochondrial carrier 30 308 IPR023395 -
Cma15g00924 379 Gene3D Mitochondrial carrier domain 127 317 IPR023395 -
Cma15g00924 379 Gene3D Mitochondrial carrier domain 11 126 IPR023395 -
Cma15g00924 379 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 25 322 IPR044712 GO:0006862|GO:0055085
Cma15g00924 379 ProSiteProfiles Solute carrier (Solcar) repeat profile. 30 119 IPR018108 -
Cma15g00924 379 MobiDBLite consensus disorder prediction 351 371 - -
Cma15g00924 379 ProSiteProfiles Solute carrier (Solcar) repeat profile. 230 312 IPR018108 -
Cma15g00924 379 MobiDBLite consensus disorder prediction 323 379 - -
Cma15g00924 379 ProSiteProfiles Solute carrier (Solcar) repeat profile. 130 218 IPR018108 -
Cma15g00924 379 MobiDBLite consensus disorder prediction 324 339 - -
Cma15g00924 379 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 25 322 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00924 Cma-Chr15:4852185 Cma17g01062 Cma-Chr17:7600293 7.27E-70 dispersed
Cma15g00924 Cma-Chr15:4852185 Cma08g00444 Cma-Chr8:2502721 1.60E-125 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00924 K15115 - csv:101216902 589.726