Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00931 ATGCACAAGAGCACTACTTCTGCGTCTAATACTATTGCTGCTGGGACCACTATGTCATCGTCGTCGCAACTGAAATCGCAGCTTCAAACAAACAACGTTTATGCTTCCCTCTATAATTCCTCAATCTTTGCTCCAAAGCAATCCGTACCTGTCTCTCTTCCATCGACTCTCTATGGTGACTCTACTCACACGGATTCAATCTCCTCTTCAAAATCGATAAACAACCACCTCTATCAAACCTGCGTCGTTCAAGATCATCAAGAAATGGTTAATCGTCACAGCCTCTGTCTCACTCATCTTCGGGAAGCAACCGAAGAAGCCGATGCTCTTCGACAAGAGAATATTCACCTTAGAAGTATTAACCACGAGCTTAGCAAACACCTGAGTCTCCTGATCCACGCTTCGGTTCAGAAACAGTACGGCTCCTCCGATCAAACTTCTCCGTTTAATTTTGTGGAGGGATTCCGCGGACTCAGTGTCGCAGAGAAAGGGACAAGCAGTTCGACATGGGAAGATATTTCCGATGAGAGTCCGACGAGCGTAATGGAGGGTGGAAGGGTAGAGGGCGTTGAGGTGGAGAGGTTTTCGCTCCCGAAGAGCATCTCCGTGAGATCCAATGGATACTTGAAGATGGCTCAAGGCGGCAGCAGCCAGGGCGGAAAGGTCCGCGTCTCATCTCGGCCCAGAACTGCAAGTCCTGTCAAGGTTACGCAGAAGGTGTACGTTCAAGGAGTGAAAGAAGAGGAAAAGCCACTAGAGCTGGAGGTGTACAACCAGGGCATGTTCAAAACCGAGCTCTGTAACAAATGGCAAGAAACAGGTAGCTGCCCTTATGGAGACCACTGCCAATTCGCCCATGGAATAGAGGAGCTCCGCCCCGTCATCCGCCACCCCCGCTACAAGACGGAGGTCTGCCGTATGGTCCTTGCCGGAGTCGTCTGCCCTTACGGTCACCGCTGCCACTTCCGCCATGCTCTCACTGACCAGGAAAGGCTCATGGGGCCGCTCAAGCCCACCTGCAGGACCGCCCCCAAGCTCGACAGGTGA 1047 51.86 MHKSTTSASNTIAAGTTMSSSSQLKSQLQTNNVYASLYNSSIFAPKQSVPVSLPSTLYGDSTHTDSISSSKSINNHLYQTCVVQDHQEMVNRHSLCLTHLREATEEADALRQENIHLRSINHELSKHLSLLIHASVQKQYGSSDQTSPFNFVEGFRGLSVAEKGTSSSTWEDISDESPTSVMEGGRVEGVEVERFSLPKSISVRSNGYLKMAQGGSSQGGKVRVSSRPRTASPVKVTQKVYVQGVKEEEKPLELEVYNQGMFKTELCNKWQETGSCPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTDQERLMGPLKPTCRTAPKLDR 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4918220 4921576 + CmaCh15G009310.1 Cma15g00931 310081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00931 348 SUPERFAMILY CCCH zinc finger 258 293 IPR036855 GO:0046872
Cma15g00931 348 SMART c3hfinal6 261 288 IPR000571 GO:0046872
Cma15g00931 348 SMART c3hfinal6 299 326 IPR000571 GO:0046872
Cma15g00931 348 Coils Coil 100 120 - -
Cma15g00931 348 ProSiteProfiles Zinc finger C3H1-type profile. 299 327 IPR000571 GO:0046872
Cma15g00931 348 PANTHER CCCH ZINC FINGER/TIS11-RELATED 55 337 IPR045877 GO:0003729
Cma15g00931 348 ProSiteProfiles Zinc finger C3H1-type profile. 261 289 IPR000571 GO:0046872
Cma15g00931 348 SUPERFAMILY CCCH zinc finger 295 329 IPR036855 GO:0046872
Cma15g00931 348 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 55 337 - -
Cma15g00931 348 MobiDBLite consensus disorder prediction 1 23 - -
Cma15g00931 348 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 287 IPR000571 GO:0046872
Cma15g00931 348 Gene3D - 255 294 - -
Cma15g00931 348 Gene3D - 295 331 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02986 Cma-Chr4:19566544 Cma15g00931 Cma-Chr15:4918220 3.36E-56 dispersed
Cma15g00931 Cma-Chr15:4918220 Cma02g01621 Cma-Chr2:9197161 6.88E-07 dispersed
Cma15g00931 Cma-Chr15:4918220 Cma12g01223 Cma-Chr12:9531573 2.90E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36448 PF00642 zf-CCCH 5.40E-12 CL0537 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00931 K18753 - csv:101203274 617.461