Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00941 ATGAACCGGGTACCGGTGGTAGGAGAAGCGGCGGAGGAAGAACGAGCGGTGGCGGAGAGGACGGAGGAGGAAGAGGAGAGCTGCAGCATTAACAATGGAGGTGGTCAGCCAAGGAAGAAGCTTAGTCTATCAAAGCATCAGTCTCGTCTCCTTGAAGATATCTTCAGGCATAACCATTCATTAAACCCTAAGCAAAAGGAAGCCTTGGCTATGGCACTTCAGCTGAAGCCAAGGCAAGTTGAAGTCTGGTTTCAGAATCGTAGGGCCAGGAGCAAGCTGAAGCAAACTGAGATGGAATACCAGTATTTAAGGAGGTGGTTTGGCTCATTGACGGAGCAAAACCGCCGGCTGCGGCGGGAACTGGAGGAGCTCAGAGCTATTAAGGTTGCTCTCCCAGCCGTCGACTCAAGCCACGGCCGACAGCCACCCCTCCCGGTGTCCACTATAACCATGTGTCCCCAGTGCAAGCGCGTAACCGCTGCCACCATAACATCTAGTAGGGCTGCAGCCACCCAGACCGCCATTGCCACCACTGCAACGCCACCGAAGGCGGTTCGGTCCGCCCTCAAGTTGCAGCAGCCGTCGCAAGGTTGA 594 55.56 MNRVPVVGEAAEEERAVAERTEEEEESCSINNGGGQPRKKLSLSKHQSRLLEDIFRHNHSLNPKQKEALAMALQLKPRQVEVWFQNRRARSKLKQTEMEYQYLRRWFGSLTEQNRRLRRELEELRAIKVALPAVDSSHGRQPPLPVSTITMCPQCKRVTAATITSSRAAATQTAIATTATPPKAVRSALKLQQPSQG 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4997473 5000029 + CmaCh15G009410.1 Cma15g00941 310091

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00941 197 Pfam Homeodomain 38 92 IPR001356 GO:0003677
Cma15g00941 197 ProSiteProfiles 'Homeobox' domain profile. 34 94 IPR001356 GO:0003677
Cma15g00941 197 MobiDBLite consensus disorder prediction 8 27 - -
Cma15g00941 197 Coils Coil 107 127 - -
Cma15g00941 197 SMART halz 94 137 IPR003106 GO:0006355|GO:0043565
Cma15g00941 197 Pfam Homeobox associated leucine zipper 94 126 IPR003106 GO:0006355|GO:0043565
Cma15g00941 197 Gene3D - 18 98 - -
Cma15g00941 197 PANTHER - 1 173 - -
Cma15g00941 197 MobiDBLite consensus disorder prediction 1 41 - -
Cma15g00941 197 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 1 173 - -
Cma15g00941 197 SUPERFAMILY Homeodomain-like 28 95 IPR009057 -
Cma15g00941 197 ProSitePatterns 'Homeobox' domain signature. 69 92 IPR017970 GO:0000981|GO:0006355
Cma15g00941 197 SMART HOX_1 36 98 IPR001356 GO:0003677
Cma15g00941 197 CDD homeodomain 37 95 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00941 K09338 HD-ZIP; homeobox-leucine zipper protein - csv:101206325 207.994
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00039 Cma15g00941 CCT
Cma04g02089 Cma15g00941 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00039 Cma-Chr4:215669 Cma15g00941 Cma-Chr15:4997473 3.14E-56 dispersed
Cma15g00941 Cma-Chr15:4997473 Cma08g00556 Cma-Chr8:3178646 8.14E-47 dispersed
Cma15g00941 Cma-Chr15:4997473 Cma04g02089 Cma-Chr4:14499939 6.10E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g421 . . . . . . . . . . . Cma04g00039 . . Sed06g0211 . . Bhi07g00288 Tan04g1613 Cmetu09g0102 Lac13g1501 Hepe01g0469 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma04g02089 Cma15g00941 Car04g02028 Car15g00884 . . . . . . . . . . . . . . . . . Csa05g01220 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003033 0 4 0 1 1 2 3 2 2 1 2 2 3 2 2 1 2 2 2 2 2 1 2 2 2 2 1 2 2 1 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36449 PF00046 Homeodomain 1.10E-16 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00941 Cma_Chr15 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0