Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00945 ATGGAGCGCCATAAACTCGGGTCGGATTCTTATTACACCATTCTAGGAGTCGGGTCGGATTGTTCCGCAGAAGAGATTCGGCGGGCTTACCGGCGGCTGGCCATGCGATGGCATCCGGATCGGTGGGCGAGAAGACGAGCGGCCCCTGCTTTACTGAGCAAAGCCAAAGCCAAATTCCAGCAGATTCAACAAGCTTATTCGGTTTTGTCGGACCAGAGGAAGAGAGCATTGTACGATGCTGGCTTCTACAATGATGAAGACGATTATGATGATGAACACAATGAGGCATTTTATGAGTTCATGCAAGAAATGGTGTCTCTAATGGCCAAAGTAAGGAGTGAGGATTGCAAGTGTGCCACTATGGAGGAGCTGCAGACAATGTTCATGGAGATGGCCCAAGGGTTTTGA 408 49.75 MERHKLGSDSYYTILGVGSDCSAEEIRRAYRRLAMRWHPDRWARRRAAPALLSKAKAKFQQIQQAYSVLSDQRKRALYDAGFYNDEDDYDDEHNEAFYEFMQEMVSLMAKVRSEDCKCATMEELQTMFMEMAQGF 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5056996 5058695 - CmaCh15G009450.1 Cma15g00945 310095

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00945 135 SUPERFAMILY Chaperone J-domain 8 97 IPR036869 -
Cma15g00945 135 ProSitePatterns Nt-dnaJ domain signature. 59 78 IPR018253 -
Cma15g00945 135 Gene3D DnaJ domain 8 134 IPR036869 -
Cma15g00945 135 SMART dnaj_3 9 74 IPR001623 -
Cma15g00945 135 ProSiteProfiles dnaJ domain profile. 10 82 IPR001623 -
Cma15g00945 135 Pfam DnaJ domain 11 79 IPR001623 -
Cma15g00945 135 PANTHER PUTATIVE, EXPRESSED-RELATED 3 135 - -
Cma15g00945 135 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 3 135 - -
Cma15g00945 135 PRINTS DnaJ domain signature 12 30 IPR001623 -
Cma15g00945 135 PRINTS DnaJ domain signature 30 45 IPR001623 -
Cma15g00945 135 PRINTS DnaJ domain signature 54 74 IPR001623 -
Cma15g00945 135 CDD DnaJ 11 71 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00945 - - - csv:101214430 190.274
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00058 Cma15g00945 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00058 Cma-Chr4:283462 Cma15g00945 Cma-Chr15:5056996 4.22E-37 dispersed
Cma15g00945 Cma-Chr15:5056996 Cma17g00665 Cma-Chr17:5572548 4.40E-25 dispersed
Cma15g00945 Cma-Chr15:5056996 Cma05g01084 Cma-Chr5:8560888 4.77E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g417 . . . . . . . . . . . Cma04g00058 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo15g00983 . Cma15g00945 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000888 2 3 1 2 3 3 5 3 3 2 2 3 3 3 3 4 3 4 5 3 3 2 3 3 4 2 2 3 3 2 87
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00945 Cma_Chr15 FPKM 0.147744 0.0 7.694418 7.897204 4.23118 3.698326 3.768293 34.685539 35.437248 36.157001