Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00946 ATGTCCCTTCATCTCAGTTATCCACTCCCGATAATCCCCTGCCGGAATGGATTCCGGACCAAATCTCAGCCACCGGCGGCAAAGTCGGTCGTCTCATGCTCCGCTATCAACCGTTACTCCGCCGGATGCAAAAGGCAATATACCAGTGTGATGATAGTCCCGACGGGCGTAGGAGCCGCCATTGGTGGATACGCAGGTGACGCTCTTCCGGTTGCTCGTGCCCTTGCCTGCGTCGTTGATTGCCTTGTAACTCATCCTAATGTGCTTAATGCAGCTATGCTTTATTGGCCTATGTCCAATGTGCTGTATGTTGAAGGCTATGCACTAGATCGGTTTGCAGAGGGTTCATGGGCCCTACAGCCTGTTCACCAGAATCGGGTAGGATTGGTTCTTGATGCTGGAATGGAGGAAGAGCTTCGAATTCGTCACTTGCAAGTGGCTGATGCTGCTAGGGCCTCTCTTGGGTTGCCTGTGATGGAATATGTTGTCACAGAGACACCTTTAATGGTAGAGAAGTGGATTGATCCAAAAACTGGGCAATCAACTGGGAGGATTAGACACCCTGCTTCACTGCTGAGGGCTGTGCAGGCATTGATGAAACGATCAAAGGTGAATGCAGTTGCAGTTGTTGGACGATTCCCAGATGATGATGTTGAAGAGACGGATAATTATCGACAAGGGATGGGAGTTGATACTTTGGCTGGGGTTGAGGCTATTATCAGCCATCTTGTGGTGAAGGAGTTTCAGATTCCATGTGCTCATGCTCCTGCTTTATCGCCTACTCCCATATGCAAATCTCTATCTCCAAAATCAGCGGCAGAGGAGTTAGGATACACATTCTTACCATGTGTACTTTCTGGGCTAAGTTATGCACCTCAATACATGAGCAAGAGTTCTGAATCATTGGGAAAGGACTGCATATTGGCAAATGATGTCGATAGTGTCATTGTACCTATAGATGCATGTGGAGGGGATGGCGCCCTTGCCTTTGCCAGAAGCAAACAGTACAAGCCACTTATTATTGCGGTTGAGGAAAATGAAACAGTTCTCAGTGATTCTCCAGAGTCACTTGGGATTGAGGCGGTAAAAGTCTCAAATTATTGGGAAGCCATAGGATCAACAACATTCGTTCCATTTCCATTACATCTCCTAATGGCCACGCAGTTTCAAGTGCCCCTCAACGATTCAACTGAGGATCTATTGAATTCACAAAGTTCCATACATATTCTACTCCTACTCACCAGTGTGGCAATGAGCAGCGAAGTCGTTGGTGATGGCCGGCGGCGTGCTTTAGCGCTGCAACTTCTTGACCTGGTACGTGACTTTGTTCTGATGTCAGGGAGGTCCATCACCGGAGCCGGAGACGTCATGAAGAAAGACTGCACCGATCTCATTCGTCGGATTGCGCTCCTGATTCATCTGGCAGAGGAGATCACAAACTTTTGTGGTGGCTTCCGGGACAAGTTTGAGGCATTGACTGACTCTATTTCTTCTTCTTCTTCTTCTTGTTTGGATTGCCTTTCGGAAGTGATCGGAGCAATTCAGGCAGCGAAACGCCTTCTGTACTCCGCTATGACTTTCTCTGTATACGACGATGATGAGGTTTCTCTGACTTCGACTGAGGGAGCTACCAAAAAACTGGTTCTGCAATTCCATTACGTGACATCCAGATTGGAAACTGCACTCTCAAATCTGCCATACGACCACTTTTGTGTAGCAGACGAAGTACAAGAACAGGTTGATTTGGTCAGAGCTCAGCTGATGAGAGCATCAAAGAACTATGAGTCTATGTCTGACCCCACACATAAGAAGCTTGAAGCTACAGGTTCTGTAAAAGCCATGATCTTTCATGATGTCAAGACCATGTCTAGTGTTGATAATGGTGATCCAGACTCTCAGCATTGTCCTCCGAACCGCGACGATCTGATCCGTTTCGATTCGGATGAGATAAAGAACTCGAATCCATGTTTCAATGAGTGTTCAAGTGTTCATTCTGAAATGGAAGATGTTCTATCCATCAAGAGCCAAGATGAAGTTGGGAAGCTTGATGTAATTGAAATTCCTGAGAACTTCTTATGTTCCATTTCCCTTGAATTGATGATCGATCCCGTCATCGTCTCGACCGGACAGACATATGAAAGATACAACATACAAAAATGGATAGACAGAGGAAATACAACATGTCCAAAGACTCAAGAGCAGCTTCAATCTCTGATCCTCACTCCAAATTTTGCTATGAGAAATTTGATCTCAGAATGGTGTGGAGAACACAATGTTAATTTAGAGAAAGGATTAACCAACAGGAAACTTAAGAAGTATAGATCATTCGAGGACGGTTGCCGAAGGACATTACCGATCAAAACGTTGGTTCGACACCTTTCTTTCGGGTCTGTACAGGAGCAGAAGGCGGCGGTGACCGAGATCCGACAGCTATCGAAAAGCAGCTCAGATCATAGAGTTGAAATAGCAAAAGCCGGAGCAATCCCACAGCTGGTTATCCTTTTAACTTCAGAAGATGTTGCAACACAAGAGAATGCAATTTCATGCATTTTGAACCTTTCACTTCATGAGCCAAACAAGAGACTTATAATGCTTCATGGTGCATTTTCTTACATTTCCCAAGTCCTCAAATTTGGGAGCATGGAAGGGAGAGAGTGTGCTGCTGGGACGATTTACAGCTTGTCATTAGCCGACGAGAACAAGGCGATGATCGGGGCGTCAGGCGTGATCCCGGACCTTATAGAAATCCTCCAGATTGGAAGCCCAAGAGGGCAGAAAGATGCTGCAGGAGCTCTATTGAATTTGTGTATGTACCAAGGGAACAAAGGCAGAGCTTTCAGGGCTGGGATTGTCAAACTATTATTGAAAATGCTCTCTGATTCAAACGGCACATTGGTTGATGACGCTCTTTATATAATGTCAGTTCTTTGCAGCCATCCGGAGGCCAAGGCTGCAATGGGGAATGCCAATTCATTGCTTGTTTTGACCAATGTTCTTAAGAAGGGGTCGTCTCGCAGCAGGGAAAATGCAGTGGCAGTTCTGCTTGCATTGTGCAAGGGAGATTGGGAGAAGCTGGAATGGTTAACCAGGCTAGGCGCGGCGGTGCCGTTGATGAAACTTTCCGAGGATGGCACGGAGAGAGCGAGGCGGAAGGCTGCTTCATTGTTGGATCAACTCAGAAAATCATGA 3189 46.38 MSLHLSYPLPIIPCRNGFRTKSQPPAAKSVVSCSAINRYSAGCKRQYTSVMIVPTGVGAAIGGYAGDALPVARALACVVDCLVTHPNVLNAAMLYWPMSNVLYVEGYALDRFAEGSWALQPVHQNRVGLVLDAGMEEELRIRHLQVADAARASLGLPVMEYVVTETPLMVEKWIDPKTGQSTGRIRHPASLLRAVQALMKRSKVNAVAVVGRFPDDDVEETDNYRQGMGVDTLAGVEAIISHLVVKEFQIPCAHAPALSPTPICKSLSPKSAAEELGYTFLPCVLSGLSYAPQYMSKSSESLGKDCILANDVDSVIVPIDACGGDGALAFARSKQYKPLIIAVEENETVLSDSPESLGIEAVKVSNYWEAIGSTTFVPFPLHLLMATQFQVPLNDSTEDLLNSQSSIHILLLLTSVAMSSEVVGDGRRRALALQLLDLVRDFVLMSGRSITGAGDVMKKDCTDLIRRIALLIHLAEEITNFCGGFRDKFEALTDSISSSSSSCLDCLSEVIGAIQAAKRLLYSAMTFSVYDDDEVSLTSTEGATKKLVLQFHYVTSRLETALSNLPYDHFCVADEVQEQVDLVRAQLMRASKNYESMSDPTHKKLEATGSVKAMIFHDVKTMSSVDNGDPDSQHCPPNRDDLIRFDSDEIKNSNPCFNECSSVHSEMEDVLSIKSQDEVGKLDVIEIPENFLCSISLELMIDPVIVSTGQTYERYNIQKWIDRGNTTCPKTQEQLQSLILTPNFAMRNLISEWCGEHNVNLEKGLTNRKLKKYRSFEDGCRRTLPIKTLVRHLSFGSVQEQKAAVTEIRQLSKSSSDHRVEIAKAGAIPQLVILLTSEDVATQENAISCILNLSLHEPNKRLIMLHGAFSYISQVLKFGSMEGRECAAGTIYSLSLADENKAMIGASGVIPDLIEILQIGSPRGQKDAAGALLNLCMYQGNKGRAFRAGIVKLLLKMLSDSNGTLVDDALYIMSVLCSHPEAKAAMGNANSLLVLTNVLKKGSSRSRENAVAVLLALCKGDWEKLEWLTRLGAAVPLMKLSEDGTERARRKAASLLDQLRKS 1062
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5061115 5070466 - CmaCh15G009460.1 Cma15g00946 310096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00946 1062 SMART arm_5 897 937 IPR000225 GO:0005515
Cma15g00946 1062 SMART arm_5 938 978 IPR000225 GO:0005515
Cma15g00946 1062 SMART arm_5 815 855 IPR000225 GO:0005515
Cma15g00946 1062 SMART arm_5 979 1019 IPR000225 GO:0005515
Cma15g00946 1062 SMART arm_5 856 896 IPR000225 GO:0005515
Cma15g00946 1062 Gene3D - 784 943 IPR011989 -
Cma15g00946 1062 Pfam Armadillo/beta-catenin-like repeat 815 854 IPR000225 GO:0005515
Cma15g00946 1062 Pfam Armadillo/beta-catenin-like repeat 898 936 IPR000225 GO:0005515
Cma15g00946 1062 Pfam Protein of unknown function (DUF3326) 48 373 IPR021763 -
Cma15g00946 1062 PANTHER U BOX DOMAIN-CONTAINING 438 1061 - -
Cma15g00946 1062 Gene3D - 944 1062 IPR011989 -
Cma15g00946 1062 Coils Coil 573 593 - -
Cma15g00946 1062 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 686 762 IPR013083 -
Cma15g00946 1062 SUPERFAMILY RING/U-box 681 759 - -
Cma15g00946 1062 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 438 1061 - -
Cma15g00946 1062 CDD RING-Ubox_PUB 691 733 IPR045210 -
Cma15g00946 1062 Pfam U-box domain 687 758 IPR003613 GO:0004842|GO:0016567
Cma15g00946 1062 ProSiteProfiles U-box domain profile. 686 760 IPR003613 GO:0004842|GO:0016567
Cma15g00946 1062 SMART Ubox_2 690 753 IPR003613 GO:0004842|GO:0016567
Cma15g00946 1062 SUPERFAMILY ARM repeat 786 1059 IPR016024 -
Cma15g00946 1062 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 826 868 IPR000225 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00997 Cma15g00946 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00054 Cma-Chr4:262719 Cma15g00946 Cma-Chr15:5061115 0 dispersed
Cma15g00946 Cma-Chr15:5061115 Cma18g00906 Cma-Chr18:7786736 2.82E-130 dispersed
Cma15g00946 Cma-Chr15:5061115 Cma04g00997 Cma-Chr4:5158776 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00946 - - cmax:111489474 1301.19