Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00951 ATGGCTGATTACTTCAGTGTCGGAGATCAAAACGAGGTCAGGTCGAGTAGTGAAGATCTGCTTAGCGCGATTATGCCATTAATGAAGCTTCTCTCCCTCACAGCCATAGGGCTATTACTTGCGCACCCAAAAATCCAAATGATCCCAAGAGCAACCTTAAGGCTCCTAAGCAAACTTGTTTTTGCCCTCTTCTTGCCCTGCCTAATCTTCACCTATCTCGGTGAGAGCATTACGCTTGACAACATTGCTAAATGGTGGTTTATCCCTGTAAATGTTGTGATCAGTACAGGGATTGGATGCTTTCTAGGGTTCTTGGTGGTCATTCTCTGCCGCCCCCCTCCTCACTTGATCCGATTCACCATTATCTCAACTGGGTTCGGTAACACAGGGAATCTCCCTCTTGCCATTGTTAGCTCTGTTTGTCATACTGCTGATAATCCCTTTGGTCCTCATTGTCACTCAAGAGGGGTTTCTTATGTTTCCTTTTGCCAATGGGTTTCTGTTATTCTTGCTTATACTCTTGTGTATCATATGATGGAGCCTCCAATGGAGTTTTATGAGATTGTTGAGGAAGGCACTGAGATTGAAGAATTGGTTGAGAGTAGTGATAATGATGTAAGTAAGCCACTCCTGATAGAAGCCGAATGGCCTGGAATTGAAGAAAAAGAAACTGAGAATTGTAAAGCACCCTTCATTGCTAGGATCTTCAAGAGCATTTCAAATGTTTCCCAGTCTACATTTCCTGATCTTGATCACTCCAGAGATAGTTCTACTACTCCGACATACCCTGAATCGATCCGGTGTTTGGCCGAACCGAGAGTTGTGAGGAAGATAAGAATTGTAGCTGAACAAACTCCTATACAGCACATTCTGCAGCCCCCAACCATTGCTTCTTTGTTAGCCATCATTGTTGGTTTAGTGCCTCAAATCAAAGCATGCTTCTTTGGCTCTGAAGCTCCACTATTGTTCATCTCCAATAGTTTAGAAATTTTAGCTGGTGCAATGGTGCCTTTTGTAATGTTGATCTTGGGCGGTATGCTTGCCGAGGGGCCTAACGAGTCATCGACACTCGGCCTGCGTACTACAATCGGTATAAGCATCGCAAGACTCTTGGTCCTTCCTGTCCTAGGAATCGGGATCATTGTAGCTGCGGATAAGCTGAACTTTCTAGTTCATGGTGATCCAATGTACAAATTTGTGGTTCTATTGCAGTACACAACACCAACTGCCATATTGGTAGGAGCAATTGCGAGCTTGAGGGGATATGCAGTGAGGGAGGCCTCAGCTCTGCTGTTCTGGGAACATGTATTTGCCCTCCTCTCCCTATCTCTTTATATTTTTGTTTACTTTAAGGTTGTTTTATAA 1365 44.1 MADYFSVGDQNEVRSSSEDLLSAIMPLMKLLSLTAIGLLLAHPKIQMIPRATLRLLSKLVFALFLPCLIFTYLGESITLDNIAKWWFIPVNVVISTGIGCFLGFLVVILCRPPPHLIRFTIISTGFGNTGNLPLAIVSSVCHTADNPFGPHCHSRGVSYVSFCQWVSVILAYTLVYHMMEPPMEFYEIVEEGTEIEELVESSDNDVSKPLLIEAEWPGIEEKETENCKAPFIARIFKSISNVSQSTFPDLDHSRDSSTTPTYPESIRCLAEPRVVRKIRIVAEQTPIQHILQPPTIASLLAIIVGLVPQIKACFFGSEAPLLFISNSLEILAGAMVPFVMLILGGMLAEGPNESSTLGLRTTIGISIARLLVLPVLGIGIIVAADKLNFLVHGDPMYKFVVLLQYTTPTAILVGAIASLRGYAVREASALLFWEHVFALLSLSLYIFVYFKVVL 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5108392 5109756 + CmaCh15G009510.1 Cma15g00951 310101

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00951 454 Pfam Membrane transport protein 23 446 IPR004776 GO:0016021|GO:0055085
Cma15g00951 454 PANTHER PROTEIN PIN-LIKES 2 9 453 IPR039305 GO:0080162
Cma15g00951 454 PANTHER AUXIN EFFLUX CARRIER FAMILY PROTEIN-RELATED 9 453 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00951 K24139 PILS, ECM3; auxin efflux carrier family protein - csv:101212746 770.0
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma15g00951 Cma18g00978 CCT
Cma15g00951 Cma18g00978 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00271 Cma-Chr3:3694961 Cma15g00951 Cma-Chr15:5108392 2.36E-100 dispersed
Cma07g01194 Cma-Chr7:6557505 Cma15g00951 Cma-Chr15:5108392 3.81E-98 dispersed
Cma15g00951 Cma-Chr15:5108392 Cma16g01284 Cma-Chr16:9739158 2.89E-60 dispersed
Cma15g00951 Cma-Chr15:5108392 Cma18g00978 Cma-Chr18:8264911 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g401 . . . . . . Bma14g01581 . . Cmo18g00982 . Cma18g00978 . Car18g00897 . Cpe09g00339 . . . . . . . . . . . . . . . Cone13ag0778 Cone19ag0781 . . . . . . . . . . . . . . . . Cmo15g00991 . Cma15g00951 . Car15g00895 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004273 1 1 0 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 2 3 3 1 2 2 2 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00951 Cma_Chr15 FPKM 18.435898 17.218792 69.294411 72.261734 19.294165 20.500448 19.066042 21.562374 22.530645 23.635733