Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00953 ATGGGGGATCACTTTGTTTTGCTGGTTGATCGATTGTTGACGGAGACGACATTAGAAGCAGCGATTGAGAGCCAAAAGCATGCCATGGATGGTTTGAAGGGGGACAGTTCTTGCCCAGAAATGGAGTTTGACAATATACCATTTCCAAAGAAAATTGTGGAATGTAGAATATGCCAGGATGAAGATGAAGACTCGAACATGGAAACACCTTGCTCGTGCTGTGGCAGCCTTAAGTATGCACATCGAAGATGCATACAGAAGTGGTGTAACGAAAAGGGTGATACAATTTGTGAGATATGCCGCCAGCAATTCAAACCAGGTTACACAGCATCTCCTCCATTATTCGAAATGGGGCGTATTCCAATGAGCTTCAGGGGGAACTGGGAGATTTCTAGAAGGAACTTGGATAGTTCTAGCTATATAGCAATGGTTTCTTCAAACCGTAATGTTGTTGATACCGAATATGATGAGTTCTCAGCTTCTGCTGCAACCAGCGTGCTATGCTTCCATTCCTTTGCTATTGTTTTCATGGTTCTTCTGGTTTTGAGGCACACTCTTCCCCTCATATTCAATGAAAGCGGTGGTTACTCTTTCCCTCTACTTCTGTCGATTTGCCTGCGAAGTTTACTGATCGTTCTACCAATATACGTTATGTTGAAAGTAGTCTCTGCAGTTCATCGTCGTCGACTTCTCCTGGCTACATCTTCTAGTTCATCCATTCATTCAACCAGCAGCATAGTTAGGAGTTCGACATCCGTATCGTCCCAACCTCAGCCTTACATTATCCGCGTTCGGTTGAAGTAA 804 43.91 MGDHFVLLVDRLLTETTLEAAIESQKHAMDGLKGDSSCPEMEFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKGDTICEICRQQFKPGYTASPPLFEMGRIPMSFRGNWEISRRNLDSSSYIAMVSSNRNVVDTEYDEFSASAATSVLCFHSFAIVFMVLLVLRHTLPLIFNESGGYSFPLLLSICLRSLLIVLPIYVMLKVVSAVHRRRLLLATSSSSSIHSTSSIVRSSTSVSSQPQPYIIRVRLK 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5118284 5120920 + CmaCh15G009530.1 Cma15g00953 310103

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00953 267 ProSiteProfiles Zinc finger RING-type profile. 55 101 IPR001841 -
Cma15g00953 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 111 IPR013083 -
Cma15g00953 267 Pfam Protein of unknown function (DUF3675) 106 221 IPR022143 -
Cma15g00953 267 SMART ringv_2 54 101 IPR011016 GO:0008270
Cma15g00953 267 CDD RING_CH-C4HC3_MARCH 55 101 - -
Cma15g00953 267 ProSiteProfiles Zinc finger RING-CH-type profile. 47 107 IPR011016 GO:0008270
Cma15g00953 267 SUPERFAMILY RING/U-box 53 105 - -
Cma15g00953 267 PANTHER OS01G0121200 PROTEIN 1 260 - -
Cma15g00953 267 Pfam RING-variant domain 55 100 IPR011016 GO:0008270
Cma15g00953 267 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 260 IPR033275 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00953 - - - csv:101213226 418.698
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01135 Cma-Chr13:8398281 Cma15g00953 Cma-Chr15:5118284 9.42E-49 dispersed
Cma14g00861 Cma-Chr14:4434862 Cma15g00953 Cma-Chr15:5118284 1.56E-77 dispersed
Cma14g00929 Cma-Chr14:4829560 Cma15g00953 Cma-Chr15:5118284 7.89E-34 dispersed
Cma15g00953 Cma-Chr15:5118284 Cma18g01151 Cma-Chr18:9251784 7.82E-44 dispersed
Cma15g00953 Cma-Chr15:5118284 Cma04g02099 Cma-Chr4:14671196 7.68E-131 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g397 . . . . . Bpe10g00871 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo15g00993 . Cma15g00953 . Car15g00897 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000995 1 11 1 2 1 2 5 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 4 2 2 4 5 2 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00953 Cma_Chr15 FPKM 1.306725 1.413782 1.404933 1.20315 1.986864 1.551065 1.76013 1.050566 0.554629 0.352751