Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00954 ATGGGGAATTATATTTCTTGCTCCTTGGCCACGCCGTTGATCAAGAATTTCAAGGCGGTTAGGGTCGTGCTTCCAGGCGGCGAGGTCCGTCAGTTCCGGGAGTCGGTGAACGCGGCGGAGCTAATGCTCGAATGTCCTACTTACTTTCTCGCCAACGCCCAGTCTCTCCACATCGGCCGCAGATTCTCCGCACTCGCCGCCGACGAGGAGTTGGAGTTTGGTAACGTTTATCTCATGTTTCCGATGAAGAGAGTTAATTCCGTTGTCACGGCGGCGGATTTAGCCACCTTCTTCATGGCGGCTAACTCTGCGGCCAGGCGGATTTCGGCCGCTAAGGTTAGGGTTATACATGAGAATCGGAATCGAGAATCCGCGGAATCGAGGCCGAGAATTAGCGATGAAAATAACGGACCGAGATTGAGCTTGGAAGGAATCGAGGGATTTCCGATGCATCGATTGTCAGTTTGTCGATCCAGGAAGCCATTGTTGGAGACGATTAAAGAAGAGCATATTAGAAGATAG 522 51.72 MGNYISCSLATPLIKNFKAVRVVLPGGEVRQFRESVNAAELMLECPTYFLANAQSLHIGRRFSALAADEELEFGNVYLMFPMKRVNSVVTAADLATFFMAANSAARRISAAKVRVIHENRNRESAESRPRISDENNGPRLSLEGIEGFPMHRLSVCRSRKPLLETIKEEHIRR 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5122421 5122942 - CmaCh15G009540.1 Cma15g00954 310104

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00954 173 MobiDBLite consensus disorder prediction 119 133 - -
Cma15g00954 173 Pfam PADRE domain 1 168 IPR025322 -
Cma15g00954 173 MobiDBLite consensus disorder prediction 119 138 - -
Cma15g00954 173 PANTHER DUF4228 DOMAIN PROTEIN-RELATED 1 171 - -
Cma15g00954 173 PANTHER DUF4228 DOMAIN PROTEIN 1 171 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00954 - - - csv:101213469 297.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02302 Cma-Chr4:16042099 Cma15g00954 Cma-Chr15:5122421 6.77E-51 dispersed
Cma08g00464 Cma-Chr8:2615548 Cma15g00954 Cma-Chr15:5122421 2.00E-12 dispersed
Cma15g00737 Cma-Chr15:3586700 Cma15g00954 Cma-Chr15:5122421 1.34E-52 dispersed
Cma15g00954 Cma-Chr15:5122421 Cma10g00334 Cma-Chr10:1533339 9.23E-13 dispersed
Cma17g01038 Cma-Chr17:7498231 Cma15g00954 Cma-Chr15:5122421 3.48E-08 transposed
Cma15g00954 Cma-Chr15:5122421 Cma04g02100 Cma-Chr4:14680107 5.09E-103 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g396 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0786 Cone19ag0790 . . . . . . . . . . . . . . . . Cmo15g00994 . Cma15g00954 . Car15g00899 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009169 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 0 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00954 Cma_Chr15 FPKM 4.455939 3.443235 67.073639 67.62809 1.32798 1.602706 0.621993 159.12236 166.149353 167.052673