Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00957 ATGCACCCATATAATCGGCTGCCCAGCAGTGGCCACTCAACTCCGTCACCGCCGCCCTCCCCTCTCCGGTCCCCTCGTCTCCGCCACTCTCGCTCTAAGGGTGCCCGCTTCACTCAAGCTCAGCAACCGCCTCGCTCTTTTCCCCAGCGACTTGCCTGGTTAATCCTCTCCGTTTTACTTCGTCGTCAAGGGATCTTCCTTTTTGCCCCTCTAATCTACATCTCCGGTATGCTTCTTTATATGGGCACTGTCTCTTTTGATGTCGTTCCAGTCATCAATCATCGCCCTGCTCCTGGCTCTGTTTATCGAAGTCCCCAACTCCTCGCCAAGCTTCGCTCCGAGATGGATGCTGACAACACTTCCACTGATGCGATATCAACGATATGGAAACACTCCTATAAGGGTGGTCAGTGGAAACCATGTATCAACAATTCCTCGGGAGGCCTACCTGAGTCAAATGGATATATTTATGTTGAGGCAAATGGCGGTCTAAATCAGCAGAGAACATCGATATGCAATGCAGTTGCTGTGGCTGGCTATCTTAATGCAACGCTTGTAATCCCTAATTTTCATTTCCACAGCATTTGGAGAGATCCTAGCAAGTTCAGCGAAATATATGATGAGGAATATTTTATCAAGACCTTAGAGAATGATGTACGCATTGTTAACAAGATTCCGGAATACATAATGGAACGCTTCGACCACAACATGACTAATGTCTACAACTTCAGAATAAAGGCATGGTCGTCCATTCAATATTACAAGGATATGGTACTTCCGAGATTACTTGAAGAACTGGTTATAAGAATTTCACCTTTTGCAAATCGATTGTCGTTTGATGCTCCTCCTGCTGTTCAACGGCTTCGATGTTTAGCAAATTATAAAGCGCTAAGGTTCGCTAATCCCATTTTATCCTTGGGAGATATTTTGGTTGCGAGGATGAGAGAACGCAGTGCTAGTAATGGTGGCAAGTATATTTCTGTACATCTTCGCTTTGAGGAGGATATGGTTGCATTCTCGTGTTGTATTTTCGATGGTGGACATAAAGAGTTGGAAGACATGAAAGCAGCAAGAGAAAAAGGATGGAAAGGGAAATTCACAAAACCGGGCAGAGTCATACGTCCTGGTGCCATAAGGATTAATGGAAAATGTCCGATGACTCCGTTAGAGGTTGGGTTGATGCTTAGGGGAATGGGATTTGACAATAGCACATTTATTTATTTGGCATCGGGAAAGATATACGACGCGGAGAGAAATATGGCTCCGCTTTTGGAGATGTTTCCAAATCTGCTTACGAAGGAAATGCTGGCATCACCTGATGAACTTTCCCCATTCAAGAACTTTTCTTCGAGGATGGCTGCTATAGACTATACGGTTTGTCTCCACAGCGAGGTGTTCGTGACGACACAGGGTGGCAACTTCCCTCATTTTCTGATGGGTCATAGAAGATATTTGTACGGCGGACACTCCAAAACTATCAGGCCGGACAAACGCAAGTTGGCATTACTTTTTGATAACCCTGCCATTGGATGGAAAAATTTCAAGAGACAAATGTTGAGCATGAGGAGTCATAGTGATTCCAAGGGATTTGATCTCAAAAGGCCGAACGACTCGATATACACCTTCCCTTGTCCAGATTGCATGTGTTTTACGAACAAATCAAACGATACGAAATCATCGTTAGCCTCGTGA 1692 44.92 MHPYNRLPSSGHSTPSPPPSPLRSPRLRHSRSKGARFTQAQQPPRSFPQRLAWLILSVLLRRQGIFLFAPLIYISGMLLYMGTVSFDVVPVINHRPAPGSVYRSPQLLAKLRSEMDADNTSTDAISTIWKHSYKGGQWKPCINNSSGGLPESNGYIYVEANGGLNQQRTSICNAVAVAGYLNATLVIPNFHFHSIWRDPSKFSEIYDEEYFIKTLENDVRIVNKIPEYIMERFDHNMTNVYNFRIKAWSSIQYYKDMVLPRLLEELVIRISPFANRLSFDAPPAVQRLRCLANYKALRFANPILSLGDILVARMRERSASNGGKYISVHLRFEEDMVAFSCCIFDGGHKELEDMKAAREKGWKGKFTKPGRVIRPGAIRINGKCPMTPLEVGLMLRGMGFDNSTFIYLASGKIYDAERNMAPLLEMFPNLLTKEMLASPDELSPFKNFSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRKLALLFDNPAIGWKNFKRQMLSMRSHSDSKGFDLKRPNDSIYTFPCPDCMCFTNKSNDTKSSLAS 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5149949 5155968 + CmaCh15G009570.1 Cma15g00957 310107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00957 563 Pfam GDP-fucose protein O-fucosyltransferase 155 485 IPR019378 -
Cma15g00957 563 MobiDBLite consensus disorder prediction 1 43 - -
Cma15g00957 563 PANTHER PROTEIN ESMERALDA 1 1 561 - -
Cma15g00957 563 CDD O-FucT_plant 155 492 IPR024709 -
Cma15g00957 563 PIRSF UCP009360 26 553 IPR024709 -
Cma15g00957 563 PANTHER - 1 561 IPR024709 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00957 - - - csv:101205140 1091.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01898 Cma-Chr14:13421397 Cma15g00957 Cma-Chr15:5149949 4.39E-86 dispersed
Cma15g00957 Cma-Chr15:5149949 Cma09g00811 Cma-Chr9:3958489 3.14E-133 dispersed
Cma16g01130 Cma-Chr16:8700603 Cma15g00957 Cma-Chr15:5149949 8.11E-77 dispersed
Cma09g01227 Cma-Chr9:8161620 Cma15g00957 Cma-Chr15:5149949 0 transposed
Cma13g00594 Cma-Chr13:5862605 Cma15g00957 Cma-Chr15:5149949 2.32E-106 transposed
Cma15g00957 Cma-Chr15:5149949 Cma04g02128 Cma-Chr4:14894301 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g433 . Blo16g00730 Bda01g01817 Bda11g00164 . . . . . . . . . . . . Cpe01g01848 . . . . . . . . . . . . . . Cone13ag0759 Cone19ag0763 Cone6ag0395 Cone9ag0421 . Csa05g02022 . . . . . Bda11g00164 . Bpe02g01993 Bma01g00466 . . . Cmo15g00996 . Cma15g00957 . Car15g00901 Cpe13g00368 . Bhi12g00905 . . . . . . Cla01g00610 Cam01g0638 Cec01g0630 Cco01g0657 Clacu01g0628 Cmu01g0601 Cre09g1901 Lsi09g00661 . Chy09g00850 Cme09g01383
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004536 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00957 Cma_Chr15 FPKM 8.043783 9.954028 8.627412 8.088974 8.876891 8.440803 9.47424 6.355217 6.462171 6.182175