Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00959 ATGAAGAGGGAGCATCACTATCTTCATCCTCGTCCGGAGCCGCCTTCCGTGGCTACTGGCTCTAATCGGGAGAGTTATTTGAACACTGGTAAGGCTAAGCTCTGGGAGGAGGAGGTACAGCTCGACGGAGGAATGGATGAGCTTCTTGCTGTTTTAGGTTACAAGGTTAAGTCGTCGGATATGGCGGAAGTTGCACAGAAGCTCGAACAGCTTGAAGAAGCTATGTGTCAAGTTCAGGATACTGGCCTTTCGCATCTCGCTTTCGACACTGTTCATTATAATCCCTCTGATCTGTCGACTTGGGTTGAAAGTATGCTCACTGAGCTCCATCCGCCCCCTACCTCGCATCTGGACGATTCATCGTTTTTAGCTCCGGCGGAATCCTCCACCATCGCTAACGTTGATTATGAACCTCAACTGCAAACCAGCAGCAGGATTTTCGAGGAGTCTTCTAGTTCGGATTATGACCTTAAAGCTATTACGGATAGCGCGATTTATTCACCGAGAGAGAGTAAGCGTTTGAAAGCCTCCGAGTCGGACACGGATGTGTTCTCCACCTCCGCGATTGGGGCTTCTAATTTTGCAACTCGCCCAGTTGTTCTCGTCGATTCGCAGGAGAACGGAATTCAACTGGTTCATGCTCTGATGGTTTGTGCTGAAGCCGTACAGCAGAATAATCTGAATCTAGCGGAGGCTCTGGTTAAGCGAATCGATTACTTAGCGGTTTCTCAAGCCGGAGCGATGAGGAAAGTCGCCACGTTCTTCGCCGAAGCATTAGCACGCCGAATCTACAGGCTCTGCCCTGAGAATCCCCTCGATCGTTCAGTGCTCGATATGCTTCAGATGCATTTCTACGAGAGCTGTCCCTATCTGAAATTCGCGCATTTCACCGCGAATCAAGCGATTCTCGAAGCCTTCGAAGGGAAGAAGCGTGTTCACGTCATCGATTTCTCGATGAACCAGGGGATGCAGTGGCCGGCTTTGATTCAAGCCCTAGCTCTACGACCGAGCGGTCCTCCTACCTTCCGACTCACCGGAATCGGCCCTCCGGCGCCGGATAACTCCGATTACCTCCAAGATGTGGGCTGGAAGCTCGCCAAATTCGCTGAAACCCTCCATGTGGAGTTCGAATACAGAGGATTTGTAGCGAACAGTTTGGCAGATCTGGACGCATCGATGCTGGAGCTCCGGCCGAGCGAGGTGGAGTCGGTGGTAGTGAACTCGGTGTTCGAGCTGCATCAGCTACTGGCTCGGCCGGGGGCAATTGAAAAGGTTCTGTCGGTGGTGAAGCAGATGAAGCCGGAGATCGTGACGGTGGTGGAGCAGGAAGCGAACCACAACGGTCCGGTTTTCGTGGAACGATTCACTGAGTCACTCCATTACTACTCGACGCTGTTTGACTCGTTGGAGTGCTCCCCCAACAGCCAAGACAAGATGATGTCGGAAATGTACCTTGGGAAACAAATCTGCAATGTGGTAGCTTGTGAAGGTGCCGACCGAGTGGAACGACACGAAACCCTGACTCAGTGGCGCACTCGGTTATCCTCCGCCGGGTTCGATCCCATCCACCTCGGCTCAAACGCATTCAAGCAAGCGAGTATCCTCCTCGCCCTGTTTGGCAGCGGCGAAGGGTACCGGGTAGAAGAGAACGAGGGATCACTAATGCTGGGATGGCACACCCGCCCCCTTATCGCCACCTCCGCCTGGAAACCCGGCAACAACCCG 1725 53.16 MKREHHYLHPRPEPPSVATGSNRESYLNTGKAKLWEEEVQLDGGMDELLAVLGYKVKSSDMAEVAQKLEQLEEAMCQVQDTGLSHLAFDTVHYNPSDLSTWVESMLTELHPPPTSHLDDSSFLAPAESSTIANVDYEPQLQTSSRIFEESSSSDYDLKAITDSAIYSPRESKRLKASESDTDVFSTSAIGASNFATRPVVLVDSQENGIQLVHALMVCAEAVQQNNLNLAEALVKRIDYLAVSQAGAMRKVATFFAEALARRIYRLCPENPLDRSVLDMLQMHFYESCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGMQWPALIQALALRPSGPPTFRLTGIGPPAPDNSDYLQDVGWKLAKFAETLHVEFEYRGFVANSLADLDASMLELRPSEVESVVVNSVFELHQLLARPGAIEKVLSVVKQMKPEIVTVVEQEANHNGPVFVERFTESLHYYSTLFDSLECSPNSQDKMMSEMYLGKQICNVVACEGADRVERHETLTQWRTRLSSAGFDPIHLGSNAFKQASILLALFGSGEGYRVEENEGSLMLGWHTRPLIATSAWKPGNNP 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5172627 5174351 - CmaCh15G009590.1 Cma15g00959 310109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00959 575 ProSiteProfiles GRAS family profile. 202 570 IPR005202 -
Cma15g00959 575 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 25 571 IPR005202 -
Cma15g00959 575 MobiDBLite consensus disorder prediction 1 25 - -
Cma15g00959 575 Pfam Transcriptional regulator DELLA protein N terminal 46 113 IPR021914 -
Cma15g00959 575 Pfam GRAS domain family 211 570 IPR005202 -
Cma15g00959 575 Coils Coil 54 74 - -
Cma15g00959 575 Gene3D - 44 109 IPR038088 -
Cma15g00959 575 PANTHER DELLA PROTEIN GAI1-RELATED 25 571 IPR030006 GO:0003712|GO:0005634
Cma15g00959 575 SMART DELLA_2 46 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02293 Cma-Chr4:15997493 Cma15g00959 Cma-Chr15:5172627 0 dispersed
Cma10g00586 Cma-Chr10:2676127 Cma15g00959 Cma-Chr15:5172627 4.83E-150 dispersed
Cma11g00578 Cma-Chr11:2784754 Cma15g00959 Cma-Chr15:5172627 2.78E-150 dispersed
Cma15g00743 Cma-Chr15:3614862 Cma15g00959 Cma-Chr15:5172627 0 dispersed
Cma15g00959 Cma-Chr15:5172627 Cma02g00217 Cma-Chr2:966346 1.21E-73 dispersed
Cma15g00959 Cma-Chr15:5172627 Cma04g02121 Cma-Chr4:14864086 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36450 PF03514 GRAS 3.10E-135 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00959 K14494 - csv:101204164 1030.78