Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00963 ATGGCCGCCAACAAATTTGCCACCATCTTGCACAGAAACTCCAACAAGTTCACCCTTATTTTAGTCTACGCCCTTCTCGAATGGGTTCTCATCTTTCTTCTTCTTCTTCAAGCCCTTTTCTCTTACCTGATCGTTAAATTTGCAGAGTGGTTTGGGCTGAAGCGCCCTTGTCTGTGGTGTTCCAGAGTGGACCATGTGTTCCAGCCTGGGAGAAAGCACTCTTACAGAGATCTTCTTTGTGAAGCTCATTCCATGGAGATTTCTAATCTGGGTTACTGTTCGAATCATCGGAAACTCACTGAGTTTCGAGATTTGTGCGAGGATTGCTCGTCTTCTTCCAAGTCCGACGAGTTCTATCAGATTCCTAAGAGCTTTCCCTTTTTTGGTGATGAGAAGGAGGGTTTGAAGAGCTGTTCTTGCTGTGGGGAGAGCTTGAAGAATCGTCTGTTTTCTCCTTGTATTTTGATTAAGCCCAATTGGGGGGATTTGGATTATGCCCAGAAGGGGGATTTTATTTCTGAGGCGGAAATTGATGTTCAATCGGAAGATGTCATCGGAGACAGGGAAATCTGCAAGGTTTCCGGCGAGGAAGAGGCTGAGAAGAACTCCACTTGCTCTGTTTGTGGCTGTGGCTGTAAAGACTCAGCGGTTCATGAGGATGACGATAGAGTTGAAGATCTGAGCTCTTGTAATCAGAAATCAGTTCAAGTTGATTGCGAGAAAGAGGATGAATTGGCTGAGATTTCTCCAAATCATCTCGAGTTCTACATTGACCGGGGCGACGATCGGCGGCTGATTCCAGTTGATTTGATCAACTTTTCGGCCTCCGAGGACGACCACAACAACGACAACGACAACAACATCATCCTTAGCCAAGTGAAAGACGAGGAACAAGGACAAGAGGATTGTGGAAATGAAGATGTCGTTTTGGATTTTGGCTCCCACTTTGAGAATCAAGATTGGGATGTTGCAGAGGTGGAAGCCATGGATGTGGAGGAGAGTAGCAGAAGCCCCTCTGGCTATGAAGATCCATCAATGAGAGTTGAAAAAGAAGAACAAGCTGAGGCTTCCATTGATGATCATAAAGAAGGCCTTGAAGAATTGGTAGTGGCAACAAGAGAGCCAGACTCAGATCTTCATCAAGATTTACAAATGTGGAATGATGAACTTGAGGTAGAGATTTCAATTGGGATGGATATTCCCGATCGTCCCGATCACGAACCCATCGGCGACATTCAAACTCAAACCGACCTTCCTCTGCATTCTGATGCACAAGAAGATCCTTCCCCAAGTTCATCATTGGAATTTGACACTATGCAAGATTCTAACAAAGCTCGGAAATCTGAGCTCGACGAGGAAGTCGAGGAAGCTAACAAAGAGGTAGAGTTCAAGATCTTGTCCGTGGAAACGAGTTCTCAACAGTTGGACGATCACAAACTGTCGAGTTCTGAGCTCAATGAGAATGAAGAAGAAGATAAAGTTCCTGATACACCCACTTCAATGGATAGTTTCCATCAGCTACACAAGAAGCTGCTATTACTCGACAGAAAGGAATCTGGAACAGAAGAGTCATTGGACGGAAGCATCATAAGCGAGACCGAAGGTGGGGATGGAGTATTGACGATCGAGAAGTTGAAGTCGGCGTTGAGAACGGAAAGAAAGGCATTGAATGCATTATATGCAGAGCTAGAAGAAGAGAGAAGTGCTTCAGCCATAGCAGCCAACCAGACAATGGCAATGATCAATAGGCTTCAAGAGGAGAAAGCAAGCATGCAAATGGAAGCTTTGCAGTACCAAAGAATGATGGAGGAGCAATCCGAGTATGACCAGGAAGCTTTACAGCTTTTGAACGAGCTCGTCGTAAAGAGGGAAAAGGAAAAGCAAGAACTCGAGAAAGAACTCGAAGTTTACCGAAAAAAGCTTCAAGATTATGAAGCTAAAGAGAAAATAGCATTGTTAAGGAACAGAAAAGAAGGTAGCTTCCAAAGTAGACATTCTTCGGTCTCTTGTAGCAATGCCGATGATAGCGATGGGCTATCGATCGATTTGAACACCGAATCAAAGAAAGATGAAGATTTATGTTCTAACCAAGAAACGGAGAATCAAAACACCCCAGCTGAGGCAGTCCTTTATTTGGACGAAACCATGGCGAACTTCGAGGAAGAAAGGCTGTCCATTCTTGAGGAGCTGAAGATGTTGGAAGAGAAGCTCTTCACGTTAAGTGATGAAGAACAACAATTAGAAGACGTTGTACATTATTGTGAACAGAATGGTAATGGCTACCACAAGAACTCGGATTATGCAACTGAAACAAACGGATTCGAAAATGGTCACCATTTGAACGGAAAACATTATCCTGAGAGAAGAGCGATGAGCACGAAAGCCAAACGACTTCTTCCCCTTTTCAACGATGCAGTCGATGCTGATATTGAAGACATAACAAACAGAGAAGAACAAGTTTTCGACTCCATTTCTGTCAACAAATTCGATACAGAATTCAGGAGGGTTGCTGTTGAGGAAGAGGTCGATCACGTGTACGAGAGATTACAAGCACTCGAAGCAGATAGGGAGTTTCTAAAGCATTGCATTGGCTCCCTAAAAAAAGGAGACAAAGGCATAGAGCTTCTCCAAGAGATCTTACAGCATCTCCGCGATCTAAGGAGCGTCGATCTCCATTTGAAGAACATGGGAGAGAGTGTCCTAGCATGA 2709 44.22 MAANKFATILHRNSNKFTLILVYALLEWVLIFLLLLQALFSYLIVKFAEWFGLKRPCLWCSRVDHVFQPGRKHSYRDLLCEAHSMEISNLGYCSNHRKLTEFRDLCEDCSSSSKSDEFYQIPKSFPFFGDEKEGLKSCSCCGESLKNRLFSPCILIKPNWGDLDYAQKGDFISEAEIDVQSEDVIGDREICKVSGEEEAEKNSTCSVCGCGCKDSAVHEDDDRVEDLSSCNQKSVQVDCEKEDELAEISPNHLEFYIDRGDDRRLIPVDLINFSASEDDHNNDNDNNIILSQVKDEEQGQEDCGNEDVVLDFGSHFENQDWDVAEVEAMDVEESSRSPSGYEDPSMRVEKEEQAEASIDDHKEGLEELVVATREPDSDLHQDLQMWNDELEVEISIGMDIPDRPDHEPIGDIQTQTDLPLHSDAQEDPSPSSSLEFDTMQDSNKARKSELDEEVEEANKEVEFKILSVETSSQQLDDHKLSSSELNENEEEDKVPDTPTSMDSFHQLHKKLLLLDRKESGTEESLDGSIISETEGGDGVLTIEKLKSALRTERKALNALYAELEEERSASAIAANQTMAMINRLQEEKASMQMEALQYQRMMEEQSEYDQEALQLLNELVVKREKEKQELEKELEVYRKKLQDYEAKEKIALLRNRKEGSFQSRHSSVSCSNADDSDGLSIDLNTESKKDEDLCSNQETENQNTPAEAVLYLDETMANFEEERLSILEELKMLEEKLFTLSDEEQQLEDVVHYCEQNGNGYHKNSDYATETNGFENGHHLNGKHYPERRAMSTKAKRLLPLFNDAVDADIEDITNREEQVFDSISVNKFDTEFRRVAVEEEVDHVYERLQALEADREFLKHCIGSLKKGDKGIELLQEILQHLRDLRSVDLHLKNMGESVLA 902
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5226154 5229983 + CmaCh15G009630.1 Cma15g00963 310113

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00963 902 PANTHER MYOSIN-BINDING PROTEIN 2 1 898 IPR039306 GO:0017022
Cma15g00963 902 Coils Coil 574 647 - -
Cma15g00963 902 MobiDBLite consensus disorder prediction 415 439 - -
Cma15g00963 902 MobiDBLite consensus disorder prediction 399 455 - -
Cma15g00963 902 MobiDBLite consensus disorder prediction 440 455 - -
Cma15g00963 902 Pfam Zein-binding 544 634 IPR007656 -
Cma15g00963 902 PANTHER MYOSIN-BINDING PROTEIN 3 1 898 - -
Cma15g00963 902 MobiDBLite consensus disorder prediction 663 683 - -
Cma15g00963 902 MobiDBLite consensus disorder prediction 343 362 - -
Cma15g00963 902 MobiDBLite consensus disorder prediction 480 498 - -
Cma15g00963 902 Coils Coil 835 855 - -
Cma15g00963 902 MobiDBLite consensus disorder prediction 468 501 - -
Cma15g00963 902 MobiDBLite consensus disorder prediction 663 680 - -
Cma15g00963 902 Coils Coil 440 467 - -
Cma15g00963 902 MobiDBLite consensus disorder prediction 328 362 - -
Cma15g00963 902 ProSiteProfiles GTD-binding domain profile. 540 638 IPR007656 -
Cma15g00963 902 Coils Coil 542 569 - -
Cma15g00963 902 Coils Coil 716 750 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00963 - - - cmos:111444983 1636.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00963 Cma-Chr15:5226154 Cma19g00065 Cma-Chr19:365560 3.53E-29 dispersed
Cma15g00963 Cma-Chr15:5226154 Cma04g02118 Cma-Chr4:14825826 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g461 . . . . . . . . . . . . . . . . Cpe01g01841 . . . . . . . . . . . . . . . . Cone6ag0387 Cone9ag0414 . Csa05g02013 . . . Blo11g00974 . . . . . . . . Cmo15g01004 . Cma15g00963 . Car15g00909 Cpe13g00361 . Bhi12g00920 . . . . . . Cla01g00620 Cam01g0648 Cec01g0640 Cco01g0666 Clacu01g0636 Cmu01g0609 Cre09g1892 Lsi09g00670 . Chy09g00840 Cme09g01372
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006446 1 3 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00963 Cma_Chr15 FPKM 27.241058 30.212008 24.733784 26.971153 22.546793 21.831816 21.629013 29.52704 27.883142 24.910141