Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00964 ATGCTAGCCATGGGATCTTCACTCTTAGTTCTCTATCCCCAGCCGTCAGATCTTCCCTGCCTTTCCTCCCGATCCCCTCCTCCCCTATTTCCCCAATTTAAATCCTCCCCTTCCCTTCATCATCCTCTTCTTCCCACAAGACCTACAGTGTTTCTCTCTCAACTTCCTCTCTCTAAAATCTTATCGTCCTCGGTCTTCGCCGCCATGGCCACCGAAGACCAGCTCAACAACCCCCCTCAGCCACCTCCTCCGGCTCCTTCTCTCCCTCACTACCCCGAGATGATTATGACAGCGATCGAAGCTCTGAACGACATAAACGGAGTGAGCAAAACGGCGATAACGAAGCAAATCGAGTCCATATACGGCGATCTGCCCCCCGCTTTCACTACGCTTCTCGCCCACCACTTAGATGTCATGAAGCAAACAGGCAAACTCCTCTTCGTCAAAAACAACTACATGAAGCCTGATCCCAACGCCCCGCCCAAGCGTGGCCGTGGCCGCCCTCCCAAGCCTAAAGTCCCTCTTCCGCCAGGCACCGTCGTCCCTCCGCCTCGCCCACGTGGCCGTCCCCCCAAACCCAAAGATCCATTCGCTCCCATTTCGCAGCCGAAGAAGAAAACCTCGACGGGAAGTGGAAGGCCACGTGGCCGCCCCCCGAAGTCCCCGAAACCTGCGCCAACGTCTGCTCCTCCTGTCGCCGGCCCCCCCAGAGGCAGAGGGCGGCCACCGAAGGTAAAGCCGGCGGTGGCCCCCATTGGGTGTTAA 765 57.91 MLAMGSSLLVLYPQPSDLPCLSSRSPPPLFPQFKSSPSLHHPLLPTRPTVFLSQLPLSKILSSSVFAAMATEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDINGVSKTAITKQIESIYGDLPPAFTTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRPRGRPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPIGC 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5270576 5271896 + CmaCh15G009640.1 Cma15g00964 310114

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00964 254 SMART h15plus2 85 151 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cma15g00964 254 SUPERFAMILY Winged helix DNA-binding domain 83 163 IPR036390 -
Cma15g00964 254 MobiDBLite consensus disorder prediction 217 242 - -
Cma15g00964 254 MobiDBLite consensus disorder prediction 170 198 - -
Cma15g00964 254 PRINTS High mobility group protein (HMGY) signature 160 172 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Cma15g00964 254 PRINTS High mobility group protein (HMGY) signature 175 186 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Cma15g00964 254 PRINTS High mobility group protein (HMGY) signature 186 197 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Cma15g00964 254 PRINTS High mobility group protein (HMGY) signature 201 220 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Cma15g00964 254 Pfam linker histone H1 and H5 family 89 150 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cma15g00964 254 MobiDBLite consensus disorder prediction 151 254 - -
Cma15g00964 254 PRINTS AT-hook-like domain signature 210 220 IPR017956 GO:0003677
Cma15g00964 254 PRINTS AT-hook-like domain signature 182 193 IPR017956 GO:0003677
Cma15g00964 254 PRINTS AT-hook-like domain signature 162 172 IPR017956 GO:0003677
Cma15g00964 254 SMART AT_hook_2 236 248 IPR017956 GO:0003677
Cma15g00964 254 SMART AT_hook_2 162 174 IPR017956 GO:0003677
Cma15g00964 254 SMART AT_hook_2 212 224 IPR017956 GO:0003677
Cma15g00964 254 SMART AT_hook_2 184 196 IPR017956 GO:0003677
Cma15g00964 254 PANTHER HISTONE H1 69 251 - -
Cma15g00964 254 Gene3D - 84 164 IPR036388 -
Cma15g00964 254 PANTHER HMG-Y-RELATED PROTEIN A 69 251 IPR031059 GO:0003677|GO:0005634
Cma15g00964 254 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 87 156 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00964 - - - csv:101218644 217.624
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00823 Cma-Chr14:4188788 Cma15g00964 Cma-Chr15:5270576 1.95E-37 dispersed
Cma15g00964 Cma-Chr15:5270576 Cma04g02117 Cma-Chr4:14795299 4.87E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g463 . . . . . . . . . . . . . . . . Cpe01g01840 . . . . . . . . . . . . . . Cone13ag0745 . Cone6ag0385 Cone9ag0412 . Csa05g02012 . . . . . . . . . . . . Cmo15g01006 . Cma15g00964 . Car15g00911 Cpe13g00360 . Bhi12g00922 . . . . . . Cla01g00621 Cam01g0649 Cec01g0642 Cco01g0667 Clacu01g0637 Cmu01g0611 Cre09g1891 Lsi09g00671 . Chy09g00839 Cme09g01371
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001668 2 2 1 3 3 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 1 2 2 4 2 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00964 Cma_Chr15 FPKM 74.761902 76.12307 13.48253 14.074175 63.722862 56.055939 60.541786 10.207206 9.844703 11.203324