Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00965 ATGGTTCGCTTCAGTGTCACCAGGAAGCCGACCGCCCCTATCGATGGCCAGAAGCCCGGTACTTCTGGCCTCCGCAAGAAGGTTAAAGTATTCATTCAACCAAACTACTTGGAGAATTTTGTTCAGGCAACATTTAATGCATTGACTGCTGAAAAAGTCCGAGGGGCTACACTTGTTGTTTCTGGAGATGGACGCTATTATTCAAAGGATGCTATTCAGATTATAATCAAGATGGCTGCAGCAAATGGGGTACGGCGTATTTGGGTTGGTCAAAATGGTTTGCTTTCAACTCCTGCTGTGTCTGCTGTCATACGTGAAAGAGTTGGGGTTGATGGATCCCGATCATCAGGAGCATTTATTTTGACTGCAAGTCACAATCCAGGAGGCCCCAATGAGGATTTTGGGATTAAATACAACATGGAAAATGGTGGCCCTGCTCCAGAAGGAATTACTGATAAGATCTATGAAAACACACAATCAATAAAGGAGTACTTAATTTCTGAAGATCTACCTAACGTGGATATTTCCGCAATAGGTGTTTCTAGCTTTGGCGGACCTGAAGGACAATTTGACGTTGAAGTTTTTGATTCTGCCAGTGACTATGTGAAGTTAATGAATTATGATGCTCTACACGGTGTTGCTGGAGCTTATGCAAAACGTATTTTTGTGGAAGAGCTCAGTGCACAAGAAAGCTCATTACTGAACTGTGTACCTAAGGAGGACTTTGGAGGAGGTCATCCTGATCCCAATCTGACTTATGCCAAGGAATTGGTTGCTCGTATGGGATTGGGTAAATCAAGCTCTGGACAAGAACCTCCAGAATTTGGTGCTGCTGCTGATGGTGATGCAGATCGCAATATGGTCCTTGGTAAAAGGTTTTTCGTCACTCCTTCAGACTCTGTTGCCATTATTGCTGCTAATGCTGTTGAAGCTATTCCGTACTTCTCTGGTGGTTTAAAGGGTGTCGCCAGGAGCATGCCAACCTCTGCTGCACTAGATGTGGTTGCCAAAAACTTGAACTTGAAGTTTTTTGAGGTGCCCACTGGCTGGAAATTTTTCGGTAATTTAATGGATGCAGGAATGTGCTCCGTCTGTGGGGAAGAGAGTTTTGGAACTGGATCTGACCATATTCGTGAGAAAGATGGAATTTGGGCAGTTTTGGCTTGGTTATCTATTCTTGCTTATAAAAACAAGGCAAACCTTGATAGTGGAAAGCTTGTGACAGTCGAAGACATAGTTCGCCAACACTGGGCCACCTATGGTCGTCATTATTATACTAGATACGATTATGAGTTCAGTTTTTCATTAATGATCAAAGGAGTTCGTTCAGATGTTTCAAAGGTTGTCCATGGTGATGAATTTGAGTATAAAGATCCTGTTGATGGTTCCATCTCAAAGCATCAGGGTATTCGATATTTGTTTGAAGACGGTTCACGACTGGTCTTCCGCCTGTCTGGAACTGGCTCTGAAGGCGCAACTATTCGGCTCTACATTGAGCAATATGAGAAAGATCCATCAAAAACTGGGAGAGATTCTCAGGAAGCTCTCGCTCCTCTGGTGGAAGTTGCTCTTAAGCTCTCAAAAATGCAAGAATTTACCGGCCGATCTGCTCCTACCGTCATTACTTAA 1629 43.59 MVRFSVTRKPTAPIDGQKPGTSGLRKKVKVFIQPNYLENFVQATFNALTAEKVRGATLVVSGDGRYYSKDAIQIIIKMAAANGVRRIWVGQNGLLSTPAVSAVIRERVGVDGSRSSGAFILTASHNPGGPNEDFGIKYNMENGGPAPEGITDKIYENTQSIKEYLISEDLPNVDISAIGVSSFGGPEGQFDVEVFDSASDYVKLMNYDALHGVAGAYAKRIFVEELSAQESSLLNCVPKEDFGGGHPDPNLTYAKELVARMGLGKSSSGQEPPEFGAAADGDADRNMVLGKRFFVTPSDSVAIIAANAVEAIPYFSGGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDAGMCSVCGEESFGTGSDHIREKDGIWAVLAWLSILAYKNKANLDSGKLVTVEDIVRQHWATYGRHYYTRYDYEFSFSLMIKGVRSDVSKVVHGDEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVEVALKLSKMQEFTGRSAPTVIT 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5359067 5368120 + CmaCh15G009650.1 Cma15g00965 310115

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00965 542 PANTHER BNAA09G30060D PROTEIN 4 115 - -
Cma15g00965 542 SUPERFAMILY Phosphoglucomutase, first 3 domains 205 294 IPR016055 GO:0005975|GO:0016868
Cma15g00965 542 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 205 289 IPR005845 GO:0005975
Cma15g00965 542 Gene3D - 295 422 - -
Cma15g00965 542 MobiDBLite consensus disorder prediction 1 20 - -
Cma15g00965 542 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 297 420 IPR005846 GO:0005975|GO:0016868
Cma15g00965 542 Gene3D - 202 294 - -
Cma15g00965 542 PRINTS Phosphoglucomutase/phosphomannomutase family signature 117 131 IPR005841 GO:0005975|GO:0016868
Cma15g00965 542 PRINTS Phosphoglucomutase/phosphomannomutase family signature 238 251 IPR005841 GO:0005975|GO:0016868
Cma15g00965 542 PRINTS Phosphoglucomutase/phosphomannomutase family signature 202 221 IPR005841 GO:0005975|GO:0016868
Cma15g00965 542 PRINTS Phosphoglucomutase/phosphomannomutase family signature 273 288 IPR005841 GO:0005975|GO:0016868
Cma15g00965 542 CDD PGM1 10 542 - -
Cma15g00965 542 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 115 431 IPR045244 GO:0004614|GO:0005975
Cma15g00965 542 SUPERFAMILY Phosphoglucomutase, first 3 domains 5 205 IPR016055 GO:0005975|GO:0016868
Cma15g00965 542 SUPERFAMILY Phosphoglucomutase, first 3 domains 281 427 IPR016055 GO:0005975|GO:0016868
Cma15g00965 542 Pfam Phosphoglucomutase/phosphomannomutase, C-terminal domain 465 505 IPR005843 GO:0016868|GO:0071704
Cma15g00965 542 ProSitePatterns Phosphoglucomutase and phosphomannomutase phosphoserine signature. 118 127 IPR016066 GO:0000287
Cma15g00965 542 SUPERFAMILY Phosphoglucomutase, C-terminal domain 422 542 IPR036900 GO:0016868|GO:0071704
Cma15g00965 542 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 17 164 IPR005844 GO:0005975|GO:0016868
Cma15g00965 542 Gene3D - 423 542 - -
Cma15g00965 542 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 436 542 IPR045244 GO:0004614|GO:0005975
Cma15g00965 542 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 4 115 IPR045244 GO:0004614|GO:0005975
Cma15g00965 542 Gene3D - 5 201 - -
Cma15g00965 542 PANTHER BNAA09G30060D PROTEIN 115 431 - -
Cma15g00965 542 PANTHER BNAA09G30060D PROTEIN 436 542 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00965 K01835 pgm; phosphoglucomutase [EC:5.4.2.2] - csv:101218883 991.49
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g02117 Cma15g00965 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01022 Cma-Chr2:6069760 Cma15g00965 Cma-Chr15:5359067 0 dispersed
Cma15g00965 Cma-Chr15:5359067 Cma15g01394 Cma-Chr15:8778243 0 dispersed
Cma15g00965 Cma-Chr15:5359067 Cma04g02117 Cma-Chr4:14795299 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g464 . . . . . . Bma14g01897 . . . . . . . . . Cpe01g01839 . . . . . . . . . . . . . . . . Cone6ag0384 Cone9ag0411 . Csa05g02011 . . Blo06g01007 Blo11g00973 . . . . . . . Cmo04g02216 Cmo15g01007 Cma04g02117 Cma15g00965 Car04g02059 Car15g00912 Cpe13g00359 . Bhi12g00924 . . . . . . Cla01g00622 Cam01g0650 Cec01g0643 Cco01g0668 Clacu01g0638 Cmu01g0612 Cre09g1890 Lsi09g00672 . Chy09g00838 Cme09g01370
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005872 2 2 2 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00965 Cma_Chr15 FPKM 52.530479 53.123985 134.39624 145.219681 62.838539 52.57674 65.160309 53.560993 49.90757 57.232265