Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma15g00966 | ATGTTGACGGCAATTTCAGCGGTGGTCGGCGAAGGGTTCATCGCCAAAGACATGACGTTCGAGAACAGAGCAGGACCAGAGAAGCACCAAGCTGTTGCCCTCCGAACTAACGCCGATCGCTCAATTTTCTATCGATGCAGCTTCAAAGGCTACCAAGACACTCTATACGCCCACTCCAACCGCCATTTCTTCCGTGAATGCCACATCTACGGAACCATCGACTTCATTTTCGGCGATGGCGCCTCTGTATTTCAAAATTGCAACATCTTCGTCAGAAAGCCGATGGAAAACCAGAAAAACACGGTGACGGCGCAGGCGAGGTCCGACCCGAATGAAAACACGGGGTTTGTGATACATAATTCCGTTGTCAGAGCGGCACCGGACCTGAAGGCGGTGGAGGGTGTGTACAAAACCTATTTGGGTAGGCCGTGGAAGGCGTATTCGAGGACGGTGGTAATGAGGAACGTTTTGGATGGGCTAATTGAACCGGCGGGGTGGCTTCCTTGGGGCGGAGATTTCGGTCTGAAGACGGTTTATTATGGGGAGTTTAAGAACAGCGGTGGCGGGGCAAGTACAATGAGGAGGGTGCAGTGGCCGGGGTACCATGTCATGAAGACTGAGGCGGAGGCCGAGAGATTTACAGTGGAAAGTTTCCTGGAAGGAGGAGGTTGGATTCCGGGCACCGGAGTGCCATTTGGAAATGGGGTATGA | 711 | 53.02 | MLTAISAVVGEGFIAKDMTFENRAGPEKHQAVALRTNADRSIFYRCSFKGYQDTLYAHSNRHFFRECHIYGTIDFIFGDGASVFQNCNIFVRKPMENQKNTVTAQARSDPNENTGFVIHNSVVRAAPDLKAVEGVYKTYLGRPWKAYSRTVVMRNVLDGLIEPAGWLPWGGDFGLKTVYYGEFKNSGGGASTMRRVQWPGYHVMKTEAEAERFTVESFLEGGGWIPGTGVPFGNGV | 236 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 5368498 | 5369208 | - | CmaCh15G009660.1 | Cma15g00966 | 310116 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma15g00966 | 236 | Gene3D | - | 2 | 236 | IPR012334 | - | |
| Cma15g00966 | 236 | PANTHER | PECTINESTERASE INHIBITOR 5-RELATED | 4 | 235 | - | - | |
| Cma15g00966 | 236 | Pfam | Pectinesterase | 3 | 221 | IPR000070 | GO:0030599|GO:0042545 | |
| Cma15g00966 | 236 | SUPERFAMILY | Pectin lyase-like | 3 | 233 | IPR011050 | - | |
| Cma15g00966 | 236 | ProSitePatterns | Pectinesterase signature 2. | 69 | 78 | IPR033131 | - | |
| Cma15g00966 | 236 | PANTHER | PECTINESTERASE | 4 | 235 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma15g00966 | Cma-Chr15:5368498 | Cma04g00334 | Cma-Chr4:1639073 | 4.29E-111 | dispersed | |
| Cma15g00966 | Cma-Chr15:5368498 | Cma06g01146 | Cma-Chr6:7721885 | 6.04E-102 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma15g00966 | - | K01051 | csv:101219120 | 419.853 |