Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00971 ATGGAGGGAGCGGAAATGGAGCTTGAGCGACGCAGCAAGTTTCTGAATGGGCTTATTTTGAAGAAGAAGGCGGGGGAGCATCAAGAGCACCGCGATCGTCTCAATATTCGCGTTAGAGCCTCCGATATGCCGTTTCCTCTCCAGAATCGCGCTTTTAGTTGCGCTCGTGAACTGCTCGATTCCATGCCTGGGAAGCTCGACAGCAAACGCCTCGCTCTTACCCTAAAAAAGGAATTTGATTCGTCCTATGGTCCAGCATGGCATTGCATCGTGGGAACTAGCTTTGGGTCGTATGAAATTGGGTATTTCCCTGATCTGCCGGAAGAGAAGGAAGGCGAAGAGCTCTCTGACATGTCTGAGAACAAGAAATTCCCAAATCAGGTGGCCGTCTGCGGCAGTTCATCTCCCGGAGTTGGAATCGCGGCAGGGCCACCGCACGAGGCGTTATTTCTTGTACTGAGTTATCTTCCTCTATTTGAGCTTCTTTCCATGGGCGCAGTCTGCGTATCGCTAAGAGACGCAGTGGAACACGATGTGTTGCCATGGCTTCATCTCGTCGTCGATCGGCCCTTGAGCTCCCGGCTAAACGATTACATTCTGGGGCGAATTGCCCGAAAGGCCGATGGCCGCCTTCGAACCTTGGCTTTGATCAACTGCTTCAAGATTTCAGACTCTGCACTTCACGAAGTCGTTCAGAACAATCCCCTTCTCACCAAGCTTTACGTACCTGGTTGCACGAGTTTGACTCCTGAGGGAGTGATTCGGGCAGTGGAGACTCTATCACAACATTCTCACAATTTGAATAGCCTAATGATTGGTGGCATTTACAACATAGAGAATGAACACCTTGAAGTCCTCAAGTACTATCTTCTCAAAAACCGATCGCAGCAACAACAGCAACAGCAACAGCAACAACGTCGTCTGTACCACAAGGACATTGAGGCATCGAAGTTGTTAAGGAACGAATGCGTGGCAATGATTGATGTAGAAATGTGCCCAAAATGCCAGGAGATGGGGAGAGTTTATGACTGCTCAAGGGAGAGATGCAAGATAAAGCAAGAGCAGAAATTTGGGGCAGAGTGCCGAGGTTGCAGTGGTTGCGTGCCAAGGTGCGAAGAATGCGGCGGATGCGTAGATGGTGATGAAACAGAGGAGGCTGTATGTGTAGGTGTCTTGTGTACAAGTTGTTGGCTTCAGCTTCCCAAATGCAACCATTGTAATAAGCCATATTGCACGCGACACCGTCAGAATGTTGCAAGTAGCTCTGCTGCTGGGTTTGTTTGTGAAGTTTGTATTGAAACTTAG 1305 49.27 MEGAEMELERRSKFLNGLILKKKAGEHQEHRDRLNIRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALTLKKEFDSSYGPAWHCIVGTSFGSYEIGYFPDLPEEKEGEELSDMSENKKFPNQVAVCGSSSPGVGIAAGPPHEALFLVLSYLPLFELLSMGAVCVSLRDAVEHDVLPWLHLVVDRPLSSRLNDYILGRIARKADGRLRTLALINCFKISDSALHEVVQNNPLLTKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYYLLKNRSQQQQQQQQQQRRLYHKDIEASKLLRNECVAMIDVEMCPKCQEMGRVYDCSRERCKIKQEQKFGAECRGCSGCVPRCEECGGCVDGDETEEAVCVGVLCTSCWLQLPKCNHCNKPYCTRHRQNVASSSAAGFVCEVCIET 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5436652 5440907 + CmaCh15G009710.1 Cma15g00971 310121

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00971 434 SMART Dynein_light_2 31 103 IPR001372 GO:0007017|GO:0030286
Cma15g00971 434 SUPERFAMILY RNI-like 204 294 - -
Cma15g00971 434 SUPERFAMILY F-box domain 145 187 IPR036047 GO:0005515
Cma15g00971 434 PANTHER F-BOX PROTEIN SKIP28 130 431 - -
Cma15g00971 434 Pfam Dynein light chain type 1 36 98 IPR001372 GO:0007017|GO:0030286
Cma15g00971 434 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 361 372 IPR017900 -
Cma15g00971 434 SUPERFAMILY DLC 30 98 IPR037177 GO:0007017|GO:0030286
Cma15g00971 434 Gene3D Ribonuclease Inhibitor 144 346 IPR032675 -
Cma15g00971 434 Gene3D Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 25 103 IPR037177 GO:0007017|GO:0030286
Cma15g00971 434 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 130 431 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00971 - - - bhj:120092447 509.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01812 Cma-Chr4:9128645 Cma15g00971 Cma-Chr15:5436652 6.49E-40 dispersed
Cma05g00066 Cma-Chr5:284948 Cma15g00971 Cma-Chr15:5436652 7.48E-45 dispersed
Cma12g00056 Cma-Chr12:201111 Cma15g00971 Cma-Chr15:5436652 6.18E-46 dispersed
Cma15g00971 Cma-Chr15:5436652 Cma18g00723 Cma-Chr18:6540510 1.47E-41 dispersed
Cma15g00971 Cma-Chr15:5436652 Cma04g02114 Cma-Chr4:14761578 3.80E-50 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g477 Blo01g00768 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0378 Cone9ag0407 . . . . . . . . . Bpe02g01978 Bma01g00480 . . . Cmo15g01018 . Cma15g00971 . Car15g00918 Cpe13g00355 . Bhi12g00929 . . . . . . Cla01g00626 Cam01g0655 Cec01g0647 Cco01g0672 Clacu01g0643 Cmu01g0618 Cre09g1886 Lsi09g00677 . Chy09g00833 Cme09g01365
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013070 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00971 Cma_Chr15 FPKM 6.723872 7.677458 3.642715 3.496863 6.693415 6.591203 6.985493 9.554196 8.611304 9.707542