Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00974 ATGGGAGACGTGAAGGACAAGTTCAAGGGTTTCATGAAAAGGTTCAATAATCCCTTGTCTTCTTCTTCCTCTGCTAGTTTCAAGGGCCAGGGAAGAGTTTTAGGATCGTCCTCTTCGGGGTCAACTACTTCCTTGCCTACCCGCCCATCGCAAAATCCCATTTCAAAGCCGAAGCCGGTTAATCCATCTTCGGATTCCCCGCTAAATTCTAAGCCCCCGGTTGCAAATTCAATTGCCAGTGCCCAAAACAGGTCAGAGCAGTCGAATAAATCCAACCCAGATCGTAATCCGGCCGACGGATTTGATCCGTTTGACTCGTTTATAACATCTGGGAAAAGATCTGGAAATGGGTATTCCTTAAATGTGTTTGAATGTCCGATTTGTGGCCAAAATTACGGGTCTGAAGAAGAGGTTTCGGTGCACGTGGATAGCTGTGTCATCGACAGTGCATCCAAAGGACCAGCAGATCTGTCCACGAACGATGCAGAATCTCAGAGTGAACTGGAGTCTTGCGTTGGCACTTTCTTATCAGGGAAGCCGTCACAAAGTTCATTGGATATCGTTCTGAAGCTTTTGAGGAACATAGTTCGGGAACCAGACAATTCAAAGTTTAGGAAGATTCGTCTGAGTAATCCCAAAATTAAGGAGGCAATTGGTGAGGCTGTGGGAGGAGTGGACTTGTTGGAGTTTGTGGGGTTTAAATTGCGAGAGGAAGATGGTGAAATGTGGGCAACCATGGAGGTCCCAACAGCGGAAGAAATTAACATATTAGGTAAGGTAGTGGATTCAATTGACCGCCCAAAGCTTGATGAACAACAGCAGAAACCCAGCACTGCTACTATGGCTACAACTCAGGCTGATGAACTGGTCGAACCAAAGAAAGTAGACAGACAGATTCGGGTATTCTTTGCTGTCCCTGAAAATATTGCAGCCAACATCGAGCTACCGGACTCGTTTTACAACCTCTCTGTTGAAGAGGTTAAAAGAGAAGCTATAATGAGGAAACAAAAGATTGCTGAATCTCAGCTTTTGGTTCCCAAATCATACAAGGAAAAACAGGCAAAAGCTGCAAGGAGGAAGTATACAAGAACAGTTATCAGAATTCAATTTCCGGATGGTGTGGTACTTCAAGGTGTTTTTTCTCCTCGGGAGCCAACAAGTGCTCTATATGAGTTTGTGAGCACGGCACTGAAGGAACCCAGTTTGGAATTTGAGTTGATACATCCTGTCGGTGTTAAACGGCGTACAATCGCACATTTTCCCACGGGAGAGAGAGGTAAAACGCTAGACGATGAGGAGTTAGTCCCTTCAGCTTTGGTCAAGTTTAGACCAATGGAAACAGATTCAGTTGTCTTCACAGGTTTGCGTAATGAACTCCTTGAGATCATTGAACCACTCGTAATCGGCTCAGCTGTAGCTCCTCCTCCACAACTATAA 1437 45.23 MGDVKDKFKGFMKRFNNPLSSSSSASFKGQGRVLGSSSSGSTTSLPTRPSQNPISKPKPVNPSSDSPLNSKPPVANSIASAQNRSEQSNKSNPDRNPADGFDPFDSFITSGKRSGNGYSLNVFECPICGQNYGSEEEVSVHVDSCVIDSASKGPADLSTNDAESQSELESCVGTFLSGKPSQSSLDIVLKLLRNIVREPDNSKFRKIRLSNPKIKEAIGEAVGGVDLLEFVGFKLREEDGEMWATMEVPTAEEINILGKVVDSIDRPKLDEQQQKPSTATMATTQADELVEPKKVDRQIRVFFAVPENIAANIELPDSFYNLSVEEVKREAIMRKQKIAESQLLVPKSYKEKQAKAARRKYTRTVIRIQFPDGVVLQGVFSPREPTSALYEFVSTALKEPSLEFELIHPVGVKRRTIAHFPTGERGKTLDDEELVPSALVKFRPMETDSVVFTGLRNELLEIIEPLVIGSAVAPPPQL 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5471654 5474803 - CmaCh15G009740.1 Cma15g00974 310124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00974 478 CDD PUB 170 266 - -
Cma15g00974 478 SUPERFAMILY PUG domain-like 181 244 IPR036339 -
Cma15g00974 478 SUPERFAMILY Ubiquitin-like 330 442 IPR029071 -
Cma15g00974 478 Pfam PUB domain 182 247 IPR018997 -
Cma15g00974 478 MobiDBLite consensus disorder prediction 1 107 - -
Cma15g00974 478 Gene3D - 353 444 - -
Cma15g00974 478 SMART ubx_3 356 444 IPR001012 GO:0005515
Cma15g00974 478 CDD UBX_UBXN6 364 443 - -
Cma15g00974 478 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 467 - -
Cma15g00974 478 ProSiteProfiles UBX domain profile. 359 442 IPR001012 GO:0005515
Cma15g00974 478 MobiDBLite consensus disorder prediction 15 51 - -
Cma15g00974 478 SMART PGNneu 183 250 - -
Cma15g00974 478 Pfam UBX domain 360 438 IPR001012 GO:0005515
Cma15g00974 478 Gene3D - 177 266 - -
Cma15g00974 478 SMART c2hc_5 122 146 IPR006642 GO:0003677|GO:0006281
Cma15g00974 478 MobiDBLite consensus disorder prediction 57 95 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00670 Cma-Chr5:3443900 Cma15g00974 Cma-Chr15:5471654 4.17E-08 dispersed
Cma04g02951 Cma-Chr4:19423788 Cma15g00974 Cma-Chr15:5471654 1.96E-09 transposed
Cma15g00974 Cma-Chr15:5471654 Cma04g02112 Cma-Chr4:14756552 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00974 K14011 - csv:101209321 778.859