Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00977 ATGGATAAAATCTTCCGGGTAATGAGTATCAATAGTTCAACACATGAATTACTCAATCCTACGCTGAGAAGTCCTAAATATCTCACTCCGCTTCTGCTCTTTCATGGTTCCAACAAAAGTCTGGCCTCAGATTCGGAGCTGGAACTCGATTTTGACAAGCTCGAACATCGATCTTCAATACCCAGGTCTCCAAGAAGCTGGATTTCTGAAAAACAGGTTGATCTCAGAGAGATTTCAAAAGCAAGGGAGTTGAATGTTCAGATAGACCCATGGCCGGAGTGGGTGAACTTCATGGAATGTTTGTCAAAGAAAGGGTACTTTGAAGGAGGCGGAGTACCATTTCTGAATGCTGAATTGGGTGCAAAAGATTTCAATCATATTCGGACTGCCTGTCTTGATTTTGCAAGGGATCGGTCTAACCTTATACGGTGCTTGTCCAGGAAAGAGTTACAGGTGATTGCAGGATGTGGATGCCCAAGCATAGATAGGAAAGTTGTGAACTCAGGGAAGCGTCTCAGAGCACATGTGGGCATTGATGAGGGAAATGTCTGCAGTTCTTGCAACCTGCGGGGAGAATGTGAGAGGGCATATGCAAAGGCATGCGGAGACGGAGGAGGTCGGACCGTGGATGTCATGCGCGTTTTGTTATTTTACGGGCTTGATCACATCTCTGCTATGGTGGAGAACAGACCTTGTGTGAACAAGAAGGCTAATGACTCTGTTAGAAAGCTGTTGAAAGAAATTGTTGATTACAGTGCAGGAGAACGTGAATCTGATGTTCTAAAGTCTAATGAGGGGTTTTCAACAGAAAATCATGAGACAAATGCTTCAGCAACGCACGGCGACTGGCATTGTCCAAAATGCAACTTCTTCAACTTTTCTAGAAACGTCAAGTGCTTTCGTTGTGGTAGTATAGCCCTTGAGAGGCTTCGGAAACGAAACGAGGATCAAGCCAATCTTCCGTTGAAGAAGGGCGACTGGATTTGTGACAAATGTAATTTCTTGAACTTTGCTAAGAATTCAACATGTTTGCAATGCAAAGAGAAGCCGTTGAATCGACAGCTGAATCTGGGGGAGTGGGAATGCGAATCGTGCAACTATATTAATTTTAGGAAGAACACGCTATGCTTGAGGTGTGATCACCGACGGCCCAAAGCACTAAATACTAGAAACGTTTCTGCTGGACCTAAATTGTGTTCTGGTAAAGTTGGAAATAATGCAAGTAGGAGGAAGAATGATGATGGTTGTATGTGGAGATTTGGTGGAAGTGAGGGTGAAGAACACTGCAGATTTCCGGATTTTCCAAGTGCAGAAAATGCAGAGAGAAGGAAAGTGGAGATGTTAGAGAGGAGAAGAAGCTTGGAAACTGCAATGGAGAAAGAAGAAGATCTGATCTTGAGATCTGACAATATGGAAAGAAGAATTGAGTTTGTTGAATGTAGTGATGATGAAGATATCATGGAATGA 1467 43.35 MDKIFRVMSINSSTHELLNPTLRSPKYLTPLLLFHGSNKSLASDSELELDFDKLEHRSSIPRSPRSWISEKQVDLREISKARELNVQIDPWPEWVNFMECLSKKGYFEGGGVPFLNAELGAKDFNHIRTACLDFARDRSNLIRCLSRKELQVIAGCGCPSIDRKVVNSGKRLRAHVGIDEGNVCSSCNLRGECERAYAKACGDGGGRTVDVMRVLLFYGLDHISAMVENRPCVNKKANDSVRKLLKEIVDYSAGERESDVLKSNEGFSTENHETNASATHGDWHCPKCNFFNFSRNVKCFRCGSIALERLRKRNEDQANLPLKKGDWICDKCNFLNFAKNSTCLQCKEKPLNRQLNLGEWECESCNYINFRKNTLCLRCDHRRPKALNTRNVSAGPKLCSGKVGNNASRRKNDDGCMWRFGGSEGEEHCRFPDFPSAENAERRKVEMLERRRSLETAMEKEEDLILRSDNMERRIEFVECSDDEDIME 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5496744 5500449 - CmaCh15G009770.1 Cma15g00977 310127

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00977 488 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 16 266 - -
Cma15g00977 488 SUPERFAMILY Ran binding protein zinc finger-like 274 305 IPR036443 -
Cma15g00977 488 SMART zf_4 358 382 IPR001876 -
Cma15g00977 488 SMART zf_4 281 305 IPR001876 -
Cma15g00977 488 SMART zf_4 325 349 IPR001876 -
Cma15g00977 488 Gene3D - 314 351 - -
Cma15g00977 488 Gene3D - 352 386 - -
Cma15g00977 488 Gene3D - 270 305 - -
Cma15g00977 488 Coils Coil 437 474 - -
Cma15g00977 488 Pfam Zn-finger in Ran binding protein and others 358 380 IPR001876 -
Cma15g00977 488 Pfam Zn-finger in Ran binding protein and others 323 347 IPR001876 -
Cma15g00977 488 Pfam Zn-finger in Ran binding protein and others 281 304 IPR001876 -
Cma15g00977 488 ProSitePatterns Zinc finger RanBP2-type signature. 283 302 IPR001876 -
Cma15g00977 488 ProSiteProfiles Zinc finger RanBP2 type profile. 356 385 IPR001876 -
Cma15g00977 488 ProSitePatterns Zinc finger RanBP2-type signature. 327 346 IPR001876 -
Cma15g00977 488 ProSitePatterns Zinc finger RanBP2-type signature. 360 379 IPR001876 -
Cma15g00977 488 ProSiteProfiles Zinc finger RanBP2 type profile. 279 308 IPR001876 -
Cma15g00977 488 SUPERFAMILY Ran binding protein zinc finger-like 316 349 IPR036443 -
Cma15g00977 488 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 301 488 - -
Cma15g00977 488 PANTHER ZINC FINGER PROTEIN 301 488 - -
Cma15g00977 488 PANTHER ZINC FINGER PROTEIN 16 266 - -
Cma15g00977 488 ProSiteProfiles Zinc finger RanBP2 type profile. 323 346 IPR001876 -
Cma15g00977 488 SUPERFAMILY Ran binding protein zinc finger-like 353 385 IPR036443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00977 - - - cpep:111786324 971.459
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00670 Cma-Chr9:3161245 Cma15g00977 Cma-Chr15:5496744 4.09E-13 dispersed
Cma10g00332 Cma-Chr10:1528782 Cma15g00977 Cma-Chr15:5496744 1.79E-72 dispersed
Cma15g00977 Cma-Chr15:5496744 Cma11g00317 Cma-Chr11:1577574 2.75E-77 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g489 . . . Bda11g00183 Bpe13g01010 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0370 . . Csa05g01992 . . . . . Bda11g00183 . . . . . . Cmo15g01024 . Cma15g00977 . Car15g00923 Cpe13g00350 Cpe04g01365 Bhi12g00936 . . . Hepe02g2626 . . Cla01g00635 . . Cco01g0681 Clacu01g0651 Cmu01g0625 Cre09g1879 Lsi09g00684 . Chy09g00823 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011612 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00977 Cma_Chr15 FPKM 2.500936 1.89851 2.007022 3.381826 7.362056 7.558585 8.673372 2.364596 2.805501 3.058032