Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00978 ATGGCTTGCTTGGTTTCTCGTACCGGAAGGGAGCTGCAAAGATACAATCATATGGGGTTTCGCCAAGTTGTTGGTTGTATACCCTATAGATTCAAATGCAGCGAAGATGGGGTCAAAATTCGTGATGCATATGAGGTGCTTGTGATAAGTTCTCAAAAGGGACAAGGCCTGATGTTTCCCAAGGGTGGTTGGGAACTCGATGAATCCTTGGAACAAGCTGCTTGTAGAGAATCGCTTGAAGAAGCTGGTGTTGTTGGGAAAGTTGAGTCTGAACTTGGAAAATGGAGATTCATCAGCAAAAGCCAAGGCACATACTATGAAGGCTATATGTTCCCTTTGTTTGTTGAGGAGCAACTTGAGCTGTGGCCAGAGAAACATGTTCGACAAAGAATATGGATGGGTGTAGGTGAAGCTAGAGAAGTGTGTAGACATTGGTGGATGAAGGAAGCTTTAGATATCTTAGTTGAAAGACTAGCAACATCCATGGGAGAGCAAAAGGATGGTGATGATCTGTGA 516 43.99 MACLVSRTGRELQRYNHMGFRQVVGCIPYRFKCSEDGVKIRDAYEVLVISSQKGQGLMFPKGGWELDESLEQAACRESLEEAGVVGKVESELGKWRFISKSQGTYYEGYMFPLFVEEQLELWPEKHVRQRIWMGVGEAREVCRHWWMKEALDILVERLATSMGEQKDGDDL 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5501498 5502952 - CmaCh15G009780.1 Cma15g00978 310128

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00978 171 SUPERFAMILY Nudix 15 158 IPR015797 -
Cma15g00978 171 PANTHER NUDIX HYDROLASE 17, MITOCHONDRIAL 1 167 - -
Cma15g00978 171 ProSiteProfiles Nudix hydrolase domain profile. 19 155 IPR000086 -
Cma15g00978 171 Pfam NUDIX domain 41 141 IPR000086 -
Cma15g00978 171 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 1 167 - -
Cma15g00978 171 CDD Nudix_Hydrolase_9 22 148 - -
Cma15g00978 171 ProSitePatterns Nudix box signature. 62 83 IPR020084 GO:0016787
Cma15g00978 171 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 5 157 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00978 K07766 E3.6.1.52; diphosphoinositol-polyphosphate diphosphatase [EC:3.6.1.52] - csv:101208911 310.842
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02304 Cma-Chr4:16045882 Cma15g00978 Cma-Chr15:5501498 5.84E-75 dispersed
Cma13g01155 Cma-Chr13:8499067 Cma15g00978 Cma-Chr15:5501498 4.01E-61 dispersed
Cma14g00776 Cma-Chr14:3870358 Cma15g00978 Cma-Chr15:5501498 3.51E-43 dispersed
Cma15g00735 Cma-Chr15:3569024 Cma15g00978 Cma-Chr15:5501498 1.28E-68 dispersed
Cma15g00978 Cma-Chr15:5501498 Cma04g02108 Cma-Chr4:14739529 1.62E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g490 . Blo16g00750 . . . . . . . . . . . . . . Cpe01g01832 . . . . . . . . . . . . . . . . Cone6ag0369 Cone9ag0399 . . . . . . . . . . . Bma06g01128 . . Cmo15g01025 . Cma15g00978 . Car15g00924 Cpe13g00349 . Bhi12g00937 . . . . . . Cla01g00636 Cam01g0663 Cec01g0655 Cco01g0682 Clacu01g0652 Cmu01g0626 Cre09g1878 Lsi09g00685 . . Cme09g01347
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001639 0 2 2 2 2 1 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 5 2 3 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00978 Cma_Chr15 FPKM 0.986438 1.763951 19.046045 19.478542 1.802078 2.176522 1.398092 2.247741 3.13093 2.657182