Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00981 ATGTCTTCTCCTTCCATGGAGGCGCCTGCCCAACAGATCCCTCTCTTACCCTCCCGTCCTCCCTCTAACTCTGACGCCTCCACTTCCCCCATCGGCCCCCTCGCTGTTCTCTTCGCTCACGCCACTGGCCGCCGTGGAACTTCTATGGTGGTCCGGGAGACAGCGGCGCGTGAACTTGAAGAGCGCCGCATCGATTGGGGGTATTCCAAGCCGGTGGTGGCTCTTGACATTATGTGGAATTTGGCTTTCGTTTTCGTTTCTCTGGGTGTGCTTATTCACTCGGCCGATGAAAAACCTAACACGCCAATTCGGCTTTGGATTGTCGTTTATGCGGCTCAATGCTTGGTGCACGCTGTGCTTGTGTGGTTTGAATTCAGAAGGAGGAATGCGAGGAGGGCTAGGGATATGGAGATGCAGCATAATGCATATGTAGCTAATGAAAGCGATGAAGAAGATGGTACCCCCTGGAATCTCTCCGGTGTTGCCAAAAGATGCGAGTCAGTGAACACCCTGATATCGTTAATTTGGTGGTTGTTTGGCTTTTACTGGGTCGTGGCTGGGGGTAACATCCTAATGCAGAATGCTCCATCTTTATACTGGTTGGCTGTGGTATTTCTGGCATTTGATGTGTTCTTTGCCATCTTTTGTGTTGTTTTGGCATGTTTGATTGGAATTGCTCTCTGTTGCTGCTTGCCTTGCATTATAGCTATTCTTTATGCTGTTGCAGGCCAGGAAGGTGCAACCGATGCTGATTTAAGTATGCTTCCTAAGTATAGATATCAAGTGTCCAATGAGCCTTCTTCCGGGGATGGTTTGATGGTTCCCGTCGAATCTAGCAGCAGAAACTTAACGACTGAGCGTGTTCTATTACGCGAGGATGCGGAGTGCTGTATATGCCTTAGTCCTTACGAGGACGGAGCCGAGCTTCATGCTCTTCCATGCAATCACCATTTTCATTATGCGTGTATCACAAAATGGCTGAAGATGAATGCAACATGTCCTCTGTGCAAGTACAACATTCTAAAAAATTGTGAACCCGTTTAA 1044 48.56 MSSPSMEAPAQQIPLLPSRPPSNSDASTSPIGPLAVLFAHATGRRGTSMVVRETAARELEERRIDWGYSKPVVALDIMWNLAFVFVSLGVLIHSADEKPNTPIRLWIVVYAAQCLVHAVLVWFEFRRRNARRARDMEMQHNAYVANESDEEDGTPWNLSGVAKRCESVNTLISLIWWLFGFYWVVAGGNILMQNAPSLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGATDADLSMLPKYRYQVSNEPSSGDGLMVPVESSSRNLTTERVLLREDAECCICLSPYEDGAELHALPCNHHFHYACITKWLKMNATCPLCKYNILKNCEPV 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5540924 5543018 - CmaCh15G009810.1 Cma15g00981 310131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00981 347 ProSiteProfiles Zinc finger RING-type profile. 296 337 IPR001841 -
Cma15g00981 347 SMART ring_2 296 336 IPR001841 -
Cma15g00981 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 343 IPR013083 -
Cma15g00981 347 MobiDBLite consensus disorder prediction 1 27 - -
Cma15g00981 347 SUPERFAMILY RING/U-box 282 342 - -
Cma15g00981 347 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIE1-LIKE 12 343 - -
Cma15g00981 347 Pfam Ring finger domain 295 337 IPR001841 -
Cma15g00981 347 PANTHER TARGET OF ERK KINASE MPK-1 12 343 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00042 Cma-Chr6:240349 Cma15g00981 Cma-Chr15:5540924 1.68E-88 dispersed
Cma15g00981 Cma-Chr15:5540924 Cma16g01019 Cma-Chr16:7845400 8.14E-94 dispersed
Cma15g00981 Cma-Chr15:5540924 Cma04g02103 Cma-Chr4:14704759 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00981 - K13148 csv:101211704 588.956