Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00991 ATGGATGCGAGTTCTATAGACGAAAGCAGCGGCAGCGACTCCACCTCCATTTCTCCCATCACTCCATTACTCTTCCACTCATCCCCCGCGCCTGGGATGCCCCATGAGGCCGAATCTCGGAAGCTTCCATCTTCCCGTTTCAAAGGAGTGGTCCCTCAGCCCAATGGCCGATGGGGGGCCCAGATTTACGAGAAGCATCAGAGAGTCTGGCTCGGGACATTCAACCAAGAACACCACGCTGCCAACGCCTACGACATCGCTGCCCTCCGCTTCCGTGGCCGCGACGCCGTCACCAACTTCAAATCCCTGGACGACGACGATGATAATGATGCCATGGAGGGCGAGTTTCTGAACTCCCACTCCAAGCTCGAGATCGTGGACATGCTCCGGAAACACACCTACAATGAGGAGCTCCAGCAGAGCAAGCGGCAGCGTGGGGCCATAGCGGCGGCTAATACGCCTGTCCACCATTCGGGGGTTGATTCGAAGAGGGAAGTGTTGTTTGAGAAAACGGTGACGCCGAGTGACGTGGGGAAGTTGAACCGGTTGGTGATACCGAAGCAGCACGCGGAGAAGAATTTCCCGACGGGGGAGGGGTTGGGTTCCGGGAAAGGAATGCTTTTGAACTTGGAGGATATGGGAGGGAAAGTTTGGCGGTTCCGGTACTCGTATTGGAATAGTAGCCAGAGCTATGTGTTGACTAAAGGGTGGAGCCGGTTCGTGAAAGAGAAGAGTCTCCGAGCCGGGGATGTGGTTCGGTTCCTCCGCTCCACCGGCGCGGATAAGCAGCTTTACATCGATGGAAAGGCGATAAGTGAAGGGGGGGTGAAGGCGGTTCATGTGGTCAAGCTTTTTGGAGTCAATATTCTGGAAGTGCCGCTGCCGGTGGGTCGTTGCGGCGGGGAGCCAAAGAACCAAGGGTGGAGAATGGCAATTAGCGCCTCGCTCGTTCGAGTTTCATCATTGAAGCTCTCTTCAGTCTCTCATGGTCATGATTTCTCACCTTCGTCGAAGTCGTCGTCCTTCATGGGCGTGCCACTTAATTTTCTTCCCTCTTTCCGCTCTGGGAAACAAAAGCAGTTTCATGACAATCTTGTCGTTGTATCGAAGAGGACGTCGGGTCTGGAGGAAGCCTTGAGAAATTTGAGAGAGCAAAAGCTTGAAACTGTGAGAAAAGTTAGAAAGATACCACCATTGAGGCGTGGGAAAGTATCTCCACGTCTCCCTGTCCCTGAACACATTCAAAAACCTCCTTATGTTGGTTCTTCTATACTGCCAGAAATTTCAAGTGAGTATCAAATGCATGATTCTGAAGGAATTGCTCAAATGAGGGCTGCATGTCAGCTTGCCGCTCGTGTGTTAGACTATGCTGGAACTCTAGTTAGGCCGTCAGTAACAACAAATGAAATTGACAAAGCAGTGCATCAGATGATTATTGATGCTGGTGCTTATCCATCACCTCTTGGCTACGGGGGATTTCCAAAGAGTGTTTGCACATCAGTTAATGAGTGCATGTGTCACGGAATACCAGACTCTCGTCAATTACAGGTTACAGAGGAATGTCTCGAGAGAGGTATTGCTGTATGCAAGGATGGTGCTAGTTTTAAGAAAATTGGGAAGAGAATCAGTGAGCATGCTGAAAAATATGGCTTTGGGGTGGTGGAGCGTTTTGTTGGGCATGGTGTGGGATCTGTATTTCACTCTGAACCACTTATATATCACCACCGCAATGAGGAACCTGGACATATGGTCGAAGGTCAAACTTTTACAATTGAACCAATTCTTACGATGGGAGGCATTGACTGCATAACATGGCCAGACAACTGGACCACTTTAACAGCTGATGGTAGTCCAGCTGCTCAGTTTGAGCACACTATTTTGATAACTAGAAGGGGAGCTGAAATTTTGACCATCCATTGA 1920 50.26 MDASSIDESSGSDSTSISPITPLLFHSSPAPGMPHEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNQEHHAANAYDIAALRFRGRDAVTNFKSLDDDDDNDAMEGEFLNSHSKLEIVDMLRKHTYNEELQQSKRQRGAIAAANTPVHHSGVDSKREVLFEKTVTPSDVGKLNRLVIPKQHAEKNFPTGEGLGSGKGMLLNLEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLRAGDVVRFLRSTGADKQLYIDGKAISEGGVKAVHVVKLFGVNILEVPLPVGRCGGEPKNQGWRMAISASLVRVSSLKLSSVSHGHDFSPSSKSSSFMGVPLNFLPSFRSGKQKQFHDNLVVVSKRTSGLEEALRNLREQKLETVRKVRKIPPLRRGKVSPRLPVPEHIQKPPYVGSSILPEISSEYQMHDSEGIAQMRAACQLAARVLDYAGTLVRPSVTTNEIDKAVHQMIIDAGAYPSPLGYGGFPKSVCTSVNECMCHGIPDSRQLQVTEECLERGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGSVFHSEPLIYHHRNEEPGHMVEGQTFTIEPILTMGGIDCITWPDNWTTLTADGSPAAQFEHTILITRRGAEILTIH 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5901090 5918567 + CmaCh15G009910.1 Cma15g00991 310141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00991 639 CDD AP2 45 100 IPR001471 GO:0003700|GO:0006355
Cma15g00991 639 Pfam AP2 domain 46 93 IPR001471 GO:0003700|GO:0006355
Cma15g00991 639 Gene3D Creatinase/methionine aminopeptidase superfamily 518 639 IPR036005 -
Cma15g00991 639 Gene3D Creatinase/methionine aminopeptidase superfamily 397 517 IPR036005 -
Cma15g00991 639 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Cma15g00991 639 PRINTS Ethylene responsive element binding protein signature 83 103 IPR001471 GO:0003700|GO:0006355
Cma15g00991 639 ProSiteProfiles AP2/ERF domain profile. 46 101 IPR001471 GO:0003700|GO:0006355
Cma15g00991 639 SUPERFAMILY DNA-binding pseudobarrel domain 166 266 IPR015300 -
Cma15g00991 639 Gene3D AP2/ERF domain 45 102 IPR036955 GO:0003700|GO:0006355
Cma15g00991 639 ProSiteProfiles B3 DNA-binding domain profile. 168 270 IPR003340 GO:0003677
Cma15g00991 639 MobiDBLite consensus disorder prediction 1 23 - -
Cma15g00991 639 PANTHER METHIONINE AMINOPEPTIDASE 516 638 - -
Cma15g00991 639 Pfam B3 DNA binding domain 168 262 IPR003340 GO:0003677
Cma15g00991 639 PANTHER METHIONINE AMINOPEPTIDASE 316 516 - -
Cma15g00991 639 SMART rav1_2 46 107 IPR001471 GO:0003700|GO:0006355
Cma15g00991 639 CDD MetAP1 440 637 IPR002467 GO:0006508|GO:0070006
Cma15g00991 639 Pfam Metallopeptidase family M24 515 629 IPR000994 -
Cma15g00991 639 Pfam Metallopeptidase family M24 442 516 IPR000994 -
Cma15g00991 639 PANTHER METHIONINE AMINOPEPTIDASE 316 516 - -
Cma15g00991 639 SUPERFAMILY DNA-binding domain 45 101 IPR016177 GO:0003677
Cma15g00991 639 MobiDBLite consensus disorder prediction 1 53 - -
Cma15g00991 639 PANTHER METHIONINE AMINOPEPTIDASE 516 638 - -
Cma15g00991 639 CDD B3_DNA 167 254 IPR003340 GO:0003677
Cma15g00991 639 ProSitePatterns Methionine aminopeptidase subfamily 1 signature. 557 575 IPR002467 GO:0006508|GO:0070006
Cma15g00991 639 Gene3D - 158 275 IPR015300 -
Cma15g00991 639 SUPERFAMILY Creatinase/aminopeptidase 393 637 IPR036005 -
Cma15g00991 639 SMART B3_2 168 270 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma15g00991 Cma18g01042 CCT
Cma15g00991 Cma18g01042 ECH
Cma04g02012 Cma15g00991 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01521 Cma-Chr4:7697947 Cma15g00991 Cma-Chr15:5901090 2.05E-119 dispersed
Cma15g00991 Cma-Chr15:5901090 Cma18g01042 Cma-Chr18:8666735 5.23E-121 dispersed
Cma15g00991 Cma-Chr15:5901090 Cma04g02012 Cma-Chr4:12585554 2.54E-161 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36452 PF00557 Peptidase_M24 1.40E-19 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00991 - - csv:101213374 559.681