Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00993 ATGGAGCAGGGGAAACAGGGCGTGGCGGTTAAATTCACTCCTCCACAGAACCCAGTGGAGCAGATTCAAGCTCGTTTCAAGGAGTTGGAAAATGGGTTCAAAACCTGGTTAGCCAAGCAGTCTCTCCCAGTTGAGGCCGCCGTTGTCACCGCCACCAGCGCTGTGCAGGGCGCTGCTATTGGTGGTTTTATGGGCACTCTCACCAACGACGTTTCTTCGTCTCTGCCCACTCCTCAGGTCGGCCTCAACCCTCAAGCCATGGCTTCTTTCAAGCAGGCCCAGGCTCTTGCTGGAGGTCCCTTAGTACAGGCTCGCAACTTTGCCGTGATGACCGGTGTCAATGCCGGCATATCTTCTGTTATGAAGAGATTGAGAGGCAAGGAGGATGTCCAGTCAAGCATGGTGGCTGCTTTTGGATCTGGGGCTTTGTTTTCATTGGTGAGTGGAATGGGAGGTCCAAATCAGGCTGCCAACGCTGTTACCTCTGGTTTCTTTTTCGCCCTCGTTCAAGGTGGAATTTTCAAGGTAGGGGAAAGGTTTTCTCAACCACCAGTGGAAGATGTGCACTATGCTAAAACAAGAAGCATGTTGAATAACCTTGGCCTACAGGGTTATGAGAAGAATTTCAAGAATGGCTTATTGTCCGATTCGACTTTGCCTCTGCTCACTGATAGTGCGCTTAGAGATGTCAAAATCCCGCCCGGACCAAGGCTACTCATTCTCGATCACATTCAGAGGAACCCAGAGGTGAGAGAGAGATGA 762 51.05 MEQGKQGVAVKFTPPQNPVEQIQARFKELENGFKTWLAKQSLPVEAAVVTATSAVQGAAIGGFMGTLTNDVSSSLPTPQVGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSVMKRLRGKEDVQSSMVAAFGSGALFSLVSGMGGPNQAANAVTSGFFFALVQGGIFKVGERFSQPPVEDVHYAKTRSMLNNLGLQGYEKNFKNGLLSDSTLPLLTDSALRDVKIPPGPRLLILDHIQRNPEVRER 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5950575 5954955 - CmaCh15G009930.1 Cma15g00993 310143

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00993 253 PANTHER CHLOROPLASTIC IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT HP30-2 1 246 - -
Cma15g00993 253 Pfam Tim17/Tim22/Tim23/Pmp24 family 50 166 - -
Cma15g00993 253 PANTHER MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM22 1 246 IPR039175 GO:0042721|GO:0045039
Cma15g00993 253 Pfam SAM domain (Sterile alpha motif) 197 246 IPR001660 GO:0005515
Cma15g00993 253 SUPERFAMILY SAM/Pointed domain 188 247 IPR013761 -
Cma15g00993 253 Gene3D - 193 252 IPR013761 -
Cma15g00993 253 CDD SAM_superfamily 195 246 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00993 - - - bhj:120068437 457.603
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01149 Cma15g00993 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00993 Cma-Chr15:5950575 Cma02g01149 Cma-Chr2:6788459 3.87E-139 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g931 . Blo15g00003 . . . Bpe07g01106 . . . . Cma02g01149 Cma15g00993 . . . Cpe05g00574 . . . . . . . . . . . . . . . Cone1ag1044 Cone5ag0754 . . . Csa05g00015 Chy09g01465 . . . . . . . . . . . . . . . . . Cpe13g00341 . . . . . . . . . . . . . . . . . Cme09g02016
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007153 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 0 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00993 Cma_Chr15 FPKM 17.10037 20.20731 31.924786 30.203457 32.491837 33.108849 32.713783 48.018185 46.157494 46.365833