Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00995 ATGGAGCTACTTGCTCACTCTCAGAAGAGCTATGCAGTGCTAAAATTCTGGAGAGGATGGGGTGATACAAAATTTATTTCAATTTTATTACACCTTTGGAGCATCTTGGAGCAAATGAGCAAATGGAATTGTGGAGCACGGCTCACATTGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTTTGGTTCTGCCTTATTTGGAGAGCAAAATGGCAATTGGCTATGGTGGAAGATGATGAGTAGTCGTTTTTCTCGCACAATATATGTTGGAAACTTGCCCTCAGACATAAAAGAGTATGAAATTGAAGATTTGTTCCACAAGTATGGACGAATTTTGGATATTGAATTGAAGATTCCTCCACGCCCGCCGTGTTATTGTTTTGTGGAGTTTGAGAATGTTAGGGATGCAGAAGATGCAATCCGAGCTCGTGATGGGTATAATTTTGATGGTTGCCGTCTAAGGGTTGAGCTTGCACATGGTGGTAGAGGCCCTTCATCCAGTGATCGTCGTAGCAGTTATGGTGGTGGTGGTGGCGGCGGTGGTGGTGGTGGTGGCGGCGGTGGTGGTGGAGGAGGAGGAGGGGGAGGGGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGGGTTATTGTACGTGGACTCCCATCTTCTGCTTCTTGGCAGGATTTGAAGGATCATATGCGTAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCTCGTGACAGTGAAGGGACATTTGGGGTTGTTGATTATACTAACTATGACGACATGAAATATGCTATTCGAAAACTTGATGATACTGAATTCAGAAATCCTTGGGCTAGAGGATACATTCGGGCCACTTTCGTAATCAAGATCTGGTCACCATGTCAGAGGAACCAGCATCGACGATCTCTTTCTCGATGTCGGACCTGCTCTGCTCCCACTCTCCATTGCATCTTTCTCGATGCTGCGCCTGTCGAGATGAAGATATTTTCTCCTCCGCAAACCAAGTCTTCTTCTTCCTCTTCTTCCTTTCTTCTTGTTGTGAGTGAGATGGGCGAGGCCGTGGTGGTCAGCTCTGAGGATGATATGGCGGACGTTCAGAGTATGGGCACTCATAAACCCCTCACAGATGCCCCCTCAAGTGGAGTGTTTAGGTGGGACCGATTTCTGCCCAAGATCATGCTCAGGGTCTTGCTCGTCGAAGCCGACGATTCCACCCGACAAATTATCACCGCCCTTCTCCGCAAGTGCTGCTATCGAGTGGCTGCTGTTCCTGATGGCTTAAAAGCTTGGGAGATTCTCAAACAAAGGCCTCGTAGTGTAGATCTTATCTTGGCGGAAATTGAATTGCCATCCATCTCTGGCTTTTCTCTGCTCACTTTGATCATGGAGCACGAGATTTGCAAGAACATTCCTGTTATAATGATGTCATCTGAAGATTCTATCAGCACTGTTTATAAATCCATGATGAAAGGTGCAGCAGATTATCTTGTGAAGCCCTTAAGGAGGAATGAGCTGAGGAATCTGTGGCAACATGTTTGGAGAAGACAAGCATCATCCATTCAAGAAAAGGTTGAAGTCACTTCAGAAAATGAGACTGCAAGCAATCACTCAACTGGGTATAACAAAAACATTGAGAAAGGGAGTGATACTCAGGGAAAAGCATCTCCCAAGAATTTCAAGCTACAGAAAGATGAACATCACATAAATTTGAGTCAAAGATTGGTTATGCACGAAAATGAAGCTGGAGGAGGATTGGCACCAATTACACTAAGCATGGGTATTGAGCCAATCAATGATGGGAGAAGTCCTAATATTGGTAGTGAAGCAGGTGAGAATAAGGATTTGCTTGGCAACCCATCCAGAGATGCCACTGCCTTGAATCATGATAACTACCAACAAAGTTCTCCTTCCAACAATTTCGGCTCTGCTCTTCATTTGGATCTTTCCCTGAGAAGATGTCAACCTAATGATTTTGAGGAACGTGTTGCAGAAGGACGGTCTACCCTCAAACATTCTAGTGCTTCAGCTTTTTCGAGGCCATTGCAAACATTAGAAGCAAAATCAAGCAGTATCTATGACGAACAAAAGGAATCTGGAAGCAATCCCGAGCATATTGGAAGTATTGCTGCTACTTCTACCTCTGATACAATTAATCCTACGCCAAGATCAAGTACTTCACGCACCGTAATCCCTCTTCAAGTTTCAGTAAAAAACTCGGGCTATAGCTCTTTACCTTCTCCCAAGTTCTGCACACAAGGGGGTACCCCATCGTTTCCATGCCCAACTTTAGTCACTCATCCAGAACCCATCTTTGGAAAACAAACAGTTTATCCCTTAAACCTTGAGAATCATAATTTGGAGCAATTTCTGAACCAGTATCACAACGTAAGCAGTACAACAAGCAGAAAGATAGAAAACTCAGGGCAGTCTACAGAAAATCAAGGCCATATATCGCCTACCACCGATCATAGTGCAAACGGTAGCCTATATGGTGGTAATACTACTCATGTTAGAAGCATGGGATATCCTAGCAGCTGTGGAAACAACAGAAATGTCGATTGCATCGGCATTGCAACAGTTACATCCGAGAGCAGAAATGAAGAAGCTTTGTTTTCTCAAGGAGGAGGAGATTCTCACCGATTCGGTCAAAGAGAAGCAGCTCTATCGAAGTTCCGACTCAAACGAAAAAATAGATGTTACGAGAAAAAGGTGCGTTATGAGAGCAGGAAAAAGCTGGCTGAGCAGCGTCCTAGAGTGAAGGGACAATTTGTTCGTAGAGGTACCATCGGAGAGTTGCTGGTGGGATTCGAGGAGAATTCGGCGGTGGTTATCAATAATTCGAAGAGAAAGGACCTGAACGGTGCGGATAGGAGGGGTGGAGTCGGCAAGGGAAGTTTCCCCTTCGGAGAGTTCAAGCCAGAGGTTGTGGACGTTCTTGGTGCCAGGCTTAACGCCCCAAGAAGCAAAGGAATCGGAGGGCAAGCG 2973 45.14 MELLAHSQKSYAVLKFWRGWGDTKFISILLHLWSILEQMSKWNCGARLTLRIALLVCFIVFGSALFGEQNGNWLWWKMMSSRFSRTIYVGNLPSDIKEYEIEDLFHKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAIRKLDDTEFRNPWARGYIRATFVIKIWSPCQRNQHRRSLSRCRTCSAPTLHCIFLDAAPVEMKIFSPPQTKSSSSSSSFLLVVSEMGEAVVVSSEDDMADVQSMGTHKPLTDAPSSGVFRWDRFLPKIMLRVLLVEADDSTRQIITALLRKCCYRVAAVPDGLKAWEILKQRPRSVDLILAEIELPSISGFSLLTLIMEHEICKNIPVIMMSSEDSISTVYKSMMKGAADYLVKPLRRNELRNLWQHVWRRQASSIQEKVEVTSENETASNHSTGYNKNIEKGSDTQGKASPKNFKLQKDEHHINLSQRLVMHENEAGGGLAPITLSMGIEPINDGRSPNIGSEAGENKDLLGNPSRDATALNHDNYQQSSPSNNFGSALHLDLSLRRCQPNDFEERVAEGRSTLKHSSASAFSRPLQTLEAKSSSIYDEQKESGSNPEHIGSIAATSTSDTINPTPRSSTSRTVIPLQVSVKNSGYSSLPSPKFCTQGGTPSFPCPTLVTHPEPIFGKQTVYPLNLENHNLEQFLNQYHNVSSTTSRKIENSGQSTENQGHISPTTDHSANGSLYGGNTTHVRSMGYPSSCGNNRNVDCIGIATVTSESRNEEALFSQGGGDSHRFGQREAALSKFRLKRKNRCYEKKVRYESRKKLAEQRPRVKGQFVRRGTIGELLVGFEENSAVVINNSKRKDLNGADRRGGVGKGSFPFGEFKPEVVDVLGARLNAPRSKGIGGQA 991
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5988212 6001662 - CmaCh15G009950.1 Cma15g00995 310145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00995 991 ProSiteProfiles CCT domain profile. 880 922 IPR010402 GO:0005515
Cma15g00995 991 MobiDBLite consensus disorder prediction 684 723 - -
Cma15g00995 991 Gene3D - 390 574 - -
Cma15g00995 991 MobiDBLite consensus disorder prediction 520 553 - -
Cma15g00995 991 Pfam Response regulator receiver domain 392 503 IPR001789 GO:0000160
Cma15g00995 991 ProSiteProfiles Response regulatory domain profile. 391 509 IPR001789 GO:0000160
Cma15g00995 991 SUPERFAMILY CheY-like 389 515 IPR011006 -
Cma15g00995 991 SMART rrm1_1 86 156 IPR000504 GO:0003723
Cma15g00995 991 SMART rrm1_1 208 276 IPR000504 GO:0003723
Cma15g00995 991 Gene3D - 77 202 IPR012677 -
Cma15g00995 991 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 271 IPR000504 GO:0003723
Cma15g00995 991 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 87 154 IPR000504 GO:0003723
Cma15g00995 991 SUPERFAMILY RNA-binding domain, RBD 84 271 IPR035979 GO:0003676
Cma15g00995 991 MobiDBLite consensus disorder prediction 619 638 - -
Cma15g00995 991 CDD RRM1_SF2_plant_like 86 157 - -
Cma15g00995 991 MobiDBLite consensus disorder prediction 793 830 - -
Cma15g00995 991 MobiDBLite consensus disorder prediction 159 197 - -
Cma15g00995 991 Pfam CCT motif 880 922 IPR010402 GO:0005515
Cma15g00995 991 PANTHER TWO-COMPONENT RESPONSE REGULATOR 354 912 IPR045279 GO:0009736
Cma15g00995 991 CDD RRM2_SF2_plant_like 207 279 - -
Cma15g00995 991 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR5 354 912 - -
Cma15g00995 991 CDD psREC_PRR 392 495 - -
Cma15g00995 991 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 160 IPR000504 GO:0003723
Cma15g00995 991 MobiDBLite consensus disorder prediction 520 556 - -
Cma15g00995 991 MobiDBLite consensus disorder prediction 593 638 - -
Cma15g00995 991 Gene3D - 206 280 IPR012677 -
Cma15g00995 991 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723
Cma15g00995 991 SMART REC_2 390 505 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00995 Cma-Chr15:5988212 Cma17g01088 Cma-Chr17:7688794 2.78E-81 dispersed
Cma14g02156 Cma-Chr14:14772231 Cma15g00995 Cma-Chr15:5988212 1.11E-23 wgd
Cma15g00995 Cma-Chr15:5988212 Cma02g01147 Cma-Chr2:6760695 3.58E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36454 PF00072 Response_reg 6.40E-20 CL0304 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00995 K12130 - csv:101209788 872.078