Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00997 ATGGCGTCTACTCTTTCCTCTTCTGCTTCACCTCTGTTGTCCTTCAAACCAAGACCCCTTAAGAAAGCCCCACCGCCCCGACTCACATCCCTGCCTTTCAGGGTGAGAGCTGAGGCCGGAGCCGGCGGCGACCACAGCAAAGACACATCTTTGGAGGTGCATGTCAATCCAAGCGGCCAGAGCCAGGGCACGTCCGTGGAGAGGCGCCCCGGCCCCAAGCGGCTGGCCATGGATGTTTCACCGTATGGAATCTTCGACCCTTTATCTCCAATGAGGACAATGAGGCAAATGCTGGACACAGTAGACAGGTTGTTCGACGATGCAGCAATATTGAGGCCAGGAGGCATGTGGAGCAGGGGAGAGGTCCGAGCTCCTTGGGACATCGAAGAACACGAAAACGAAATCAAGATGCGTTTCGACATGCCTGGCCTCTCCAAAGAACATGTCAAGGTATCTATTGAAGACAATTTCTTGATTATCAAAGGCAGCCATGAGGACACTAGCAGCCATGAGGAGGGCTGGTCCGCAAAGAACGCCTCTGACTACCACACCCGCCTCCAACTTCCTGATGGCATTGACAAGGACAACATCAAGGCCAAACTTAACAATGGTGTTCTTTACATCACACTCCCAAAAACCAAAATTCAACGCAATGTCATGGATATAGAGATCCAGTGA 678 52.21 MASTLSSSASPLLSFKPRPLKKAPPPRLTSLPFRVRAEAGAGGDHSKDTSLEVHVNPSGQSQGTSVERRPGPKRLAMDVSPYGIFDPLSPMRTMRQMLDTVDRLFDDAAILRPGGMWSRGEVRAPWDIEEHENEIKMRFDMPGLSKEHVKVSIEDNFLIIKGSHEDTSSHEEGWSAKNASDYHTRLQLPDGIDKDNIKAKLNNGVLYITLPKTKIQRNVMDIEIQ 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6038566 6040388 - CmaCh15G009970.1 Cma15g00997 310147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00997 225 MobiDBLite consensus disorder prediction 52 67 - -
Cma15g00997 225 MobiDBLite consensus disorder prediction 1 73 - -
Cma15g00997 225 Pfam Hsp20/alpha crystallin family 127 225 IPR002068 -
Cma15g00997 225 PANTHER HEAT SHOCK PROTEIN 21, CHLOROPLASTIC 25 225 - -
Cma15g00997 225 PANTHER 26.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 25 225 IPR044587 GO:0009408
Cma15g00997 225 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 117 225 IPR002068 -
Cma15g00997 225 CDD ACD_sHsps-like 127 212 - -
Cma15g00997 225 SUPERFAMILY HSP20-like chaperones 92 217 IPR008978 -
Cma15g00997 225 Gene3D - 80 225 IPR008978 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma15g00997 Cma18g01062 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01808 Cma-Chr4:9115640 Cma15g00997 Cma-Chr15:6038566 2.19E-36 dispersed
Cma06g00780 Cma-Chr6:4043747 Cma15g00997 Cma-Chr15:6038566 1.35E-23 dispersed
Cma14g01347 Cma-Chr14:10487066 Cma15g00997 Cma-Chr15:6038566 1.32E-17 dispersed
Cma15g00997 Cma-Chr15:6038566 Cma01g01713 Cma-Chr1:11647579 7.32E-10 dispersed
Cma15g00997 Cma-Chr15:6038566 Cma16g01142 Cma-Chr16:8775057 2.25E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00997 K13993 - csv:101210285 354.369