Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00997 ATGGCGTCTACTCTTTCCTCTTCTGCTTCACCTCTGTTGTCCTTCAAACCAAGACCCCTTAAGAAAGCCCCACCGCCCCGACTCACATCCCTGCCTTTCAGGGTGAGAGCTGAGGCCGGAGCCGGCGGCGACCACAGCAAAGACACATCTTTGGAGGTGCATGTCAATCCAAGCGGCCAGAGCCAGGGCACGTCCGTGGAGAGGCGCCCCGGCCCCAAGCGGCTGGCCATGGATGTTTCACCGTATGGAATCTTCGACCCTTTATCTCCAATGAGGACAATGAGGCAAATGCTGGACACAGTAGACAGGTTGTTCGACGATGCAGCAATATTGAGGCCAGGAGGCATGTGGAGCAGGGGAGAGGTCCGAGCTCCTTGGGACATCGAAGAACACGAAAACGAAATCAAGATGCGTTTCGACATGCCTGGCCTCTCCAAAGAACATGTCAAGGTATCTATTGAAGACAATTTCTTGATTATCAAAGGCAGCCATGAGGACACTAGCAGCCATGAGGAGGGCTGGTCCGCAAAGAACGCCTCTGACTACCACACCCGCCTCCAACTTCCTGATGGCATTGACAAGGACAACATCAAGGCCAAACTTAACAATGGTGTTCTTTACATCACACTCCCAAAAACCAAAATTCAACGCAATGTCATGGATATAGAGATCCAGTGA 678 52.21 MASTLSSSASPLLSFKPRPLKKAPPPRLTSLPFRVRAEAGAGGDHSKDTSLEVHVNPSGQSQGTSVERRPGPKRLAMDVSPYGIFDPLSPMRTMRQMLDTVDRLFDDAAILRPGGMWSRGEVRAPWDIEEHENEIKMRFDMPGLSKEHVKVSIEDNFLIIKGSHEDTSSHEEGWSAKNASDYHTRLQLPDGIDKDNIKAKLNNGVLYITLPKTKIQRNVMDIEIQ 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6038566 6040388 - CmaCh15G009970.1 Cma15g00997 310147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00997 225 MobiDBLite consensus disorder prediction 52 67 - -
Cma15g00997 225 MobiDBLite consensus disorder prediction 1 73 - -
Cma15g00997 225 Pfam Hsp20/alpha crystallin family 127 225 IPR002068 -
Cma15g00997 225 PANTHER HEAT SHOCK PROTEIN 21, CHLOROPLASTIC 25 225 - -
Cma15g00997 225 PANTHER 26.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 25 225 IPR044587 GO:0009408
Cma15g00997 225 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 117 225 IPR002068 -
Cma15g00997 225 CDD ACD_sHsps-like 127 212 - -
Cma15g00997 225 SUPERFAMILY HSP20-like chaperones 92 217 IPR008978 -
Cma15g00997 225 Gene3D - 80 225 IPR008978 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00997 K13993 HSP20; HSP20 family protein - csv:101210285 354.369
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma15g00997 Cma18g01062 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01808 Cma-Chr4:9115640 Cma15g00997 Cma-Chr15:6038566 2.19E-36 dispersed
Cma06g00780 Cma-Chr6:4043747 Cma15g00997 Cma-Chr15:6038566 1.35E-23 dispersed
Cma14g01347 Cma-Chr14:10487066 Cma15g00997 Cma-Chr15:6038566 1.32E-17 dispersed
Cma15g00997 Cma-Chr15:6038566 Cma01g01713 Cma-Chr1:11647579 7.32E-10 dispersed
Cma15g00997 Cma-Chr15:6038566 Cma16g01142 Cma-Chr16:8775057 2.25E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g217 . Blo16g01036 . Bda11g01113 Bpe13g01312 Bpe10g00948 . . Cmo04g01626 Cmo18g01082 . Cma18g01062 Car04g01604 Car18g00985 . Cpe09g00257 . Bhi07g01396 . . . . . . . . . . . . . Cone13ag0873 . Cone6ag0487 Cone9ag0499 . Csa05g02558 Chy10g01098 Cme10g00313 Blo06g00980 . . Bda11g01113 . . . Bma06g00792 . . Cmo15g01052 . Cma15g00997 . . . . . . . . . . . . . . . . . . . . . .
Vvi16g976 . . . . . . . . . . . Cma15g00997 . Car15g00933 . . . . . . . . . . Cla01g00012 Cam01g0012 Cec01g0011 Cco01g0013 Clacu01g0013 Cmu01g0013 Cre09g2492 . . . . . Csa05g00004 Chy09g01476 . . . . . . . . . . . Cmo15g01062 . . . . . Cpe13g00336 Bhi12g00695 . . . Hepe06g0826 . . . . . . . . . . . . Cme09g02023
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014143 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00997 Cma_Chr15 FPKM 7.231643 5.983114 39.231194 38.982933 1.729394 1.929866 1.963779 507.688538 547.470154 473.187073