Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01000 ATGGAAGCCACGGCTGCAGCGCGTGGTGCTTCTCTCTCCATGCATTCTCCCCAGCTCTCCCGCCAGGAATGGCGTGCCGTTGCTGATAATCACTCCGCTCGAGATGCCGCCGATGAGGAGCTGGAACGATCAAAGTTGCAATCAGATGAAAGGACTATATATGAGGTGCAGCAGGGAAGAGAACCCCTTGATGTTGACTTCTGTTCAATTTCAATAAATGGGAATCCAGATAATGATATTTTGCAGCGGCGGCTCAATGATGTCGCTAGACAAAGAGAGGATCTTCAACAGATGGAAATTGAACTTAGAGCTCAAGTTATTGCAAGATCAGAAATATTGGAAATGCAGAAGAGTTTTGATTCTCAAATGAAAGAACGCAATAATGCTGCCATCAAGATGCAGGAACAACTTTGTGAAAGAGATCAAGCTCTTCACGAATTGGAAAGGAAAATAGAAGATAAAGATAGAGAATTGCAATCAATTAAATTAGACAATGAAGCGGCTTGGGCCAAAGATGATCTTCTGCGGGAACAAGATAAAGAAATAGCAACTTACAGGAGAGAACGTGACCATTCTGAGGCTGAAAGAGCTCAGCAAATGAAACAAATGCATGAACTTCAAGAACACATCCATGAGAAAGAGCGACAGCATCTCGAGTTACAGGAGCAGCATAGGATAGCTCAAGAAGCCATTTTGTACAAAGATGAACAATTGAGGGAAGCCCATTCTTGGATTGCTCGTGTCCAGGAAATGGATGCTTTGCAATCAACTACAAACCACTCCTTACAAGCTGAATTGCGTGAACGAACGGAGCAGTATAACCAGCTATGGGTTGGTTGCCAGCGTCAGTTCGCAGAGATGGAAAGGCTTCATGTGCATGCATTGCAACAACTCCAACTCGAGTTGGCTGATGCAAGGGAAAGAAGTGGGACTTACAATGATGAATCAAATATATCTCAGACAAATTCCAAAGATGTACCACAATATGGACAAACGAATAGTAACCAATTAGGTGGAGCAGCTTCAACTGGAAATAATGGGGCGCTGTCAAGTGGGAATTCAGAAAATGTTCCATCTTTTAATTTGACGGGCAATTCATCTATCCAGACTGACCATGTATCCGGTGTTCCACTGGCCCCATCATCTCTCCTCGGGATACCACCCTACCTTCCACCTGGGCAGATGGCTGCTTTGCATCCTTTTTTGATGCATCAACCTGGGGTTCCTCATTCTGTACCATCCCAAGTTCCCCAATCTCATATGGGGCATTTTTCTTCATTACCTATATCATCCATCCAACCATGGCAGACTGAGCAGATTGTTTCAGAGGGTTCCAATGTATCTGTTCAGAATGAGCTTCAGTCATCTCAAAATGTCCAAAGCATAATGACATCAAATGCTAATTACCCCTATGAGATGACTGATAATGGGCAAGCTCTTGAACCAGATTATCTGGATGTTCATAGCAGAGAGAGAAGAGAACCTGATTCAGGGATTTCATTGTCTTCTGGAGAAACACAGCTTGAGTCAGTGGATAGAGGATACCAAGTTGCCCCCCAACCTGATACGAGCTTGCAACATGTCACCCCTCAATTTCACGATGCCCTAAGGATTGGTTCCACTTCTATTCAGCCCAACAATGAAAAGGATCAAAATAGTTTGGGTGCAGGTGATCAAGTACCTGAGGAGCAAGGGTTAAATGGGGGAAAATTAAGTCCTGCTGTCAGTACATTATCCTCTGATTCATCCTCCATTCACAATGTAAATGTCAGTGAAATGGTCATCAATGCTTCTGGCTCTGGGGTGGTTGTACCTGAAGCTTTTGTTTCTTCTGGGCCGAAAGCTCCAATGATGGTGGGGAAGACCTCAGAACCTGCCCTTCTGGATGAAAGAGCATTATTGGCTTGCATTGTTCGCACTATTCCAGCTGGTGGTAGAATTCAAATAAGTTCAACACTGCCAAATAGGCTGTGCAAGATGCTTGCACCTTTACACTGGCGTGATTATGAGAAGAAGTATGGTAAGCTCGAAGATTTTGTAGCTGGTCACCCTGAATTATTTGTGATTGAGGGAGATTATATTCAGCTTCGTGAAGGAGCACAGAAGACAATAGCAGCTACTGCAGCTTTTGCTAAGGTTGCTGCCGCAGCTGCAGCTTCGTCTCATTATTCATCACATTTGCCTTCTGTCGCTATGACCCCAATGGCTCATGCTAATCGGTCAAAGAGGATTCCATCTTCTGATTCAAAAAACATGAAAGCCGAGAAGACTTCTGTTTTTACTCCAAATATGCCCAAGGATTCTCCTCAGGGAACACAAATGAAGAATCAACCTAAAAATGGTTTTCATTCTGCTGCTGGTGGAGGTCTAGTAAACATGAAACTTTTTACAAGATCAAAGGATAGTCGTGAACTGAATGTCTCAGAAGCCAAGCCTGGTGAATCATCTGTGTTTTTGGGGTTTGAAAATGGGGCTGCTGTTGATAGAACATCAAGTGGGAGCAGTCAAAATTTACCTTCAACTGATGGGAGGTCTAGTGCCAATTTTTCTGGGAAACATCAGGGCAGGATGGCTGCTGCTCCCTTGCCTTCAAGAAGATAG 2601 43.98 MEATAAARGASLSMHSPQLSRQEWRAVADNHSARDAADEELERSKLQSDERTIYEVQQGREPLDVDFCSISINGNPDNDILQRRLNDVARQREDLQQMEIELRAQVIARSEILEMQKSFDSQMKERNNAAIKMQEQLCERDQALHELERKIEDKDRELQSIKLDNEAAWAKDDLLREQDKEIATYRRERDHSEAERAQQMKQMHELQEHIHEKERQHLELQEQHRIAQEAILYKDEQLREAHSWIARVQEMDALQSTTNHSLQAELRERTEQYNQLWVGCQRQFAEMERLHVHALQQLQLELADARERSGTYNDESNISQTNSKDVPQYGQTNSNQLGGAASTGNNGALSSGNSENVPSFNLTGNSSIQTDHVSGVPLAPSSLLGIPPYLPPGQMAALHPFLMHQPGVPHSVPSQVPQSHMGHFSSLPISSIQPWQTEQIVSEGSNVSVQNELQSSQNVQSIMTSNANYPYEMTDNGQALEPDYLDVHSRERREPDSGISLSSGETQLESVDRGYQVAPQPDTSLQHVTPQFHDALRIGSTSIQPNNEKDQNSLGAGDQVPEEQGLNGGKLSPAVSTLSSDSSSIHNVNVSEMVINASGSGVVVPEAFVSSGPKAPMMVGKTSEPALLDERALLACIVRTIPAGGRIQISSTLPNRLCKMLAPLHWRDYEKKYGKLEDFVAGHPELFVIEGDYIQLREGAQKTIAATAAFAKVAAAAAASSHYSSHLPSVAMTPMAHANRSKRIPSSDSKNMKAEKTSVFTPNMPKDSPQGTQMKNQPKNGFHSAAGGGLVNMKLFTRSKDSRELNVSEAKPGESSVFLGFENGAAVDRTSSGSSQNLPSTDGRSSANFSGKHQGRMAAAPLPSRR 866
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6046970 6054199 - CmaCh15G010000.1 Cma15g01000 310150

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01000 866 MobiDBLite consensus disorder prediction 312 364 - -
Cma15g01000 866 MobiDBLite consensus disorder prediction 827 852 - -
Cma15g01000 866 Coils Coil 175 230 - -
Cma15g01000 866 Coils Coil 295 315 - -
Cma15g01000 866 MobiDBLite consensus disorder prediction 736 787 - -
Cma15g01000 866 MobiDBLite consensus disorder prediction 489 510 - -
Cma15g01000 866 MobiDBLite consensus disorder prediction 541 582 - -
Cma15g01000 866 MobiDBLite consensus disorder prediction 751 780 - -
Cma15g01000 866 Coils Coil 78 105 - -
Cma15g01000 866 Coils Coil 144 164 - -
Cma15g01000 866 MobiDBLite consensus disorder prediction 827 866 - -
Cma15g01000 866 MobiDBLite consensus disorder prediction 11 25 - -
Cma15g01000 866 MobiDBLite consensus disorder prediction 541 558 - -
Cma15g01000 866 MobiDBLite consensus disorder prediction 307 364 - -
Cma15g01000 866 MobiDBLite consensus disorder prediction 1 49 - -
Cma15g01000 866 PANTHER OS08G0543600 PROTEIN 14 856 - -
Cma15g01000 866 MobiDBLite consensus disorder prediction 27 49 - -
Cma15g01000 866 PANTHER OS08G0543600 PROTEIN 14 856 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01000 - - - csv:101218478 1513.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01147 Cma15g01000 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01147 Cma-Chr2:6760695 Cma15g01000 Cma-Chr15:6046970 0 dispersed
Cma15g01000 Cma-Chr15:6046970 Cma02g01146 Cma-Chr2:6759841 1.44E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g982 Blo06g01050 Blo15g00076 . . . Bpe07g01028 . . . . Cma02g01147 Cma15g01000 Car02g00948 Car15g00935 . Cpe05g00579 . . . . . . . . Cla01g00014 . . Cco01g0015 Clacu01g0015 Cmu01g0015 . Cone1ag1013 Cone5ag0720 . . . Csa05g00002 Chy09g01478 . . . Bda06g00796 Bda15g00797 . . Bma08g00399 Bma12g01223 . Cmo02g01178 Cmo15g01064 . . . . . Cpe13g00335 Bhi12g00691 . . . Hepe06g0825 . . . . . . . . . . . . Cme09g02026
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004264 2 4 2 2 2 0 2 1 0 1 1 1 1 1 1 2 1 2 2 0 1 1 1 1 1 0 1 5 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01000 Cma_Chr15 FPKM 41.330143 43.741142 29.012224 29.221565 39.265823 39.956306 43.232964 26.922812 24.96611 26.29011