Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01005 ATGGCAGGAATGGCTTCCTCCACATTCAGCCCCTCCTTCTGCTTCAGATCTTTCGCCACGGCCGCATCCAACAAGACTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCAGGCGGCTTTCAAGCCACTCAAGCTTCCTCTCTTTTGGCCATGGCAGAAGGTGAAGATGGGCCCTCTGAGTGTATCTCCAATGGGATTTGGAACCTGGGCGTGGGGGAACCAGCTGTTGTGGGGCTACCAGGAATCCATGGACGCTGAGCTTCAACAGATTTTCAATTTGGCTGTGGAGAACGGAATCAATCTCTTCGATACGGCGGATTCCTATGGTACTGGAAGATTAAATGGCCAAAGCGAAAAGCTACTGGGAAAATTCATCCGAGAATCTCAAGAGAAAAATGACATTGTGGTAGCCACCAAGTTTGCTGCGTATCCATGGCGCCTAACACCGGGCCAGTTTGTGAAAGCATGCAAGGCGTCTTTGGATCGGATGCAGATTGAGAAAATTGGTATAGGACAATTACATTGGTCAACAGCGAACTATGCTCCTTTGCAGGAGATGGCTCTTTGGGATGGACTAGTGGCAATGTATGATCAGGGCTTGGTTCAAGCAGTTGGAGTGAGCAACTATGGACCAAAGCAACTAGTGAAGATACATGACTACCTTAAAGATCGAGGAGTTCCCTTATGCTCTGCTCAGGTGCAATTTTCTTTACTAAGCATAGGAGACGAACAGTTGGAGACTAAGAAGATATGTGATTCTTTGGGCATCCGCTTAATCGCTTACAGTCCTTTGGGGTTGGGAATGCTTACAGGAAAATACTCACCCTCCAAGCTTCCATCTGGACCTCGAGGTCTTCTGTTCAGGCAAATTCTACCAGGATTGGAACCTTTACTGAGTACACTAGGAAGCATTGCAGAGAAAAGGCGCAAGACAATACCACAAGTTGCTATAAACTGGTGCATATCCAAGGGAACCATACCCATACCTGGAGTTAAGACATTAAAACAAGCTCAAGAAAATCTGGGGGCTCTTGGCTGGCGCCTTACGCAAGAGGAATCAAACCTGTTGGAGGATGGAGCACGAGCATCCACCGGGAGGATGATACAGAATGTTTTCCAGACCAGAACTCAAAGGCAAAAAGAAGGGCATACTCTCCTTATCCAGGGTCTATCTAACCAGCCGGATTTTGGTACCGCCAATTGCTCCACAAAGCTGGAGAAAAAGCGGAAAAGGCACAGCAAAGCAAAGCAAAGGCATTGGCATGGGTGCTTATTGCCTTACTCTATTCTAATTCAGCTTGTCATTCACTCAGTTTTTAGCCCTAATGCTTCCATTTTTATCGATTCATAA 1353 46.64 MAGMASSTFSPSFCFRSFATAASNKTSSSSSSSSSSSQAAFKPLKLPLFWPWQKVKMGPLSVSPMGFGTWAWGNQLLWGYQESMDAELQQIFNLAVENGINLFDTADSYGTGRLNGQSEKLLGKFIRESQEKNDIVVATKFAAYPWRLTPGQFVKACKASLDRMQIEKIGIGQLHWSTANYAPLQEMALWDGLVAMYDQGLVQAVGVSNYGPKQLVKIHDYLKDRGVPLCSAQVQFSLLSIGDEQLETKKICDSLGIRLIAYSPLGLGMLTGKYSPSKLPSGPRGLLFRQILPGLEPLLSTLGSIAEKRRKTIPQVAINWCISKGTIPIPGVKTLKQAQENLGALGWRLTQEESNLLEDGARASTGRMIQNVFQTRTQRQKEGHTLLIQGLSNQPDFGTANCSTKLEKKRKRHSKAKQRHWHGCLLPYSILIQLVIHSVFSPNASIFIDS 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6071059 6074725 - CmaCh15G010050.1 Cma15g01005 310155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01005 450 Pfam Aldo/keto reductase family 64 357 IPR023210 -
Cma15g01005 450 PANTHER AFLATOXIN B1 ALDEHYDE REDUCTASE 36 364 - -
Cma15g01005 450 ProSitePatterns Aldo/keto reductase family signature 2. 193 210 IPR018170 GO:0016491
Cma15g01005 450 Gene3D - 54 363 IPR036812 -
Cma15g01005 450 SUPERFAMILY NAD(P)-linked oxidoreductase 60 359 IPR036812 -
Cma15g01005 450 PANTHER PYRIDOXAL REDUCTASE, CHLOROPLASTIC 36 364 - -
Cma15g01005 450 CDD AKR_AtPLR-like 62 358 - -
Cma15g01005 450 PRINTS Aldo-keto reductase signature 95 119 IPR020471 GO:0016491
Cma15g01005 450 PRINTS Aldo-keto reductase signature 159 177 IPR020471 GO:0016491
Cma15g01005 450 PRINTS Aldo-keto reductase signature 193 210 IPR020471 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01005 K05275 E1.1.1.65; pyridoxine 4-dehydrogenase [EC:1.1.1.65] - csv:101218000 669.463
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g01013 Cma-Chr7:5243336 Cma15g01005 Cma-Chr15:6071059 2.55E-12 dispersed
Cma15g01005 Cma-Chr15:6071059 Cma14g01874 Cma-Chr14:13282083 3.87E-20 dispersed
Cma17g00206 Cma-Chr17:1069504 Cma15g01005 Cma-Chr15:6071059 1.57E-11 dispersed
Cma15g01005 Cma-Chr15:6071059 Cma01g01325 Cma-Chr1:9450119 6.96E-74 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g987 Blo06g01053 . . . . . . . . . . Cma15g01005 . Car15g00939 . . . . . . . . . . Cla01g00019 Cam01g0018 Cec01g0016 Cco01g0020 Clacu01g0019 Cmu01g0018 Cre09g2489 . . . . . Csa05g00021 . . . . . Bda15g00795 . Bpe12g00339 Bma08g00397 . . . Cmo15g01068 . . . . . Cpe13g00331 Bhi12g00686 . . . . . . . . . . . . . . . . Cme09g02012
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012223 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01005 Cma_Chr15 FPKM 3.435311 2.550794 17.758356 18.051479 45.55854 41.237602 45.067078 2.160396 2.622075 2.208781