Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01007 ATGCTCTCCTCCACTCTGCAAAGACCTCCGAAGATTTCCTCTCCGCTTCTCTCTCTGTCGCTTCCATCGAAAACCCCTGCTCTCTCCCTCCGCTTCACTCAAATTTTCTCTGGGGTTTCTGGGTTGCATCCCACCAAGAAGCATCTCGGTTTAAGAGCTCTTGCCTCCGCTACCGACATGGCATCGGAGAAGAGGGTTTTTGATTCAGGGGAAGATTTGGCGGTTTCTCTAGCGAAATACACCGCCGATTTGTCGGATCATTTTGCTAAGAACAGGGGCGCTTTCACTGTGGTTCTCTCCGGTGGATCTCTGATCAAATGCCTCAGGAAATTGGTGGAGCCACCGTATGTTGATTCAATAGATTGGTCGAAATGGCATGTGTTTTGGGTTGATGAGAGAGTTGTACCCAAAGATCACGTTGACAGCAACTACAAACTCGCTTATGATGGATTTCTTTCTCAGGTGCCAATTCTCCCCGGTCATGTTTATGCTATTAATGATGCACTATCTGCTGAGGGTGCAGCTGAAGATTACGAAACCTGCCTGAAGCATTTGGTAAATACCAAAGTGGTCGATGTCTCAGCAACAAGCAGGTTCCCGAAATTCGATCTTATGCTTCTTGGTATGGGCCCAGATGGGCATGTGGCTTCTTTATTCCCAGGCCATCCCCTTCTCAATGAAAGTCAGAAATGGGTTACCTACATCAAGGATTCCCCTAAACCACCCCCAGAGAGAATCACTTTTACCTTCCCAGTTATCAACTCATCGGCATACATCGCACTTGTAGCGCCTGGTGCTAGCAAGGCCGACGCTGTGTATACTGCACTAGGAGGAGGAAGTTCTCAGAATTCTGAAACATTACCTGTTCAGAGGGTTGCTCCTGAATGGGCTTTGACATGGTTCTTGGACAAGGATGCTGCTTCCAAGCTCTAA 933 48.02 MLSSTLQRPPKISSPLLSLSLPSKTPALSLRFTQIFSGVSGLHPTKKHLGLRALASATDMASEKRVFDSGEDLAVSLAKYTADLSDHFAKNRGAFTVVLSGGSLIKCLRKLVEPPYVDSIDWSKWHVFWVDERVVPKDHVDSNYKLAYDGFLSQVPILPGHVYAINDALSAEGAAEDYETCLKHLVNTKVVDVSATSRFPKFDLMLLGMGPDGHVASLFPGHPLLNESQKWVTYIKDSPKPPPERITFTFPVINSSAYIALVAPGASKADAVYTALGGGSSQNSETLPVQRVAPEWALTWFLDKDAASKL 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6079656 6082350 + CmaCh15G010070.1 Cma15g01007 310157

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01007 310 SUPERFAMILY NagB/RpiA/CoA transferase-like 65 310 IPR037171 -
Cma15g01007 310 TIGRFAM pgl: 6-phosphogluconolactonase 66 310 IPR005900 GO:0005975|GO:0006098|GO:0017057
Cma15g01007 310 CDD 6PGL 71 302 IPR005900 GO:0005975|GO:0006098|GO:0017057
Cma15g01007 310 Pfam Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 71 295 IPR006148 GO:0005975
Cma15g01007 310 PANTHER 6-PHOSPHOGLUCONOLACTONASE 53 310 IPR039104 -
Cma15g01007 310 Gene3D - 58 310 - -
Cma15g01007 310 PANTHER 6-PHOSPHOGLUCONOLACTONASE 3, CHLOROPLASTIC 53 310 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01007 K01057 PGLS, pgl, devB; 6-phosphogluconolactonase [EC:3.1.1.31] - csv:101206872 514.227
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma15g01007 Cma16g00026 CCT
Cma02g01142 Cma15g01007 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01142 Cma-Chr2:6743952 Cma15g01007 Cma-Chr15:6079656 0 dispersed
Cma04g01708 Cma-Chr4:8585126 Cma15g01007 Cma-Chr15:6079656 2.73E-93 dispersed
Cma15g01007 Cma-Chr15:6079656 Cma16g00026 Cma-Chr16:124453 7.49E-106 dispersed
Cma15g01006 Cma-Chr15:6075384 Cma15g01007 Cma-Chr15:6079656 2.68E-147 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g989 . . Bda05g00137 . Bpe03g00225 . Bma10g01315 . Cmo16g00030 . Cma02g01142 Cma15g01007 Car02g00946 Car15g00940 . Cpe05g00582 Cpe14g00020 . . . . . . . Cla01g00021 Cam01g0020 Cec01g0018 Cco01g0022 Clacu01g0021 Cmu01g0020 Cre09g2487 Cone1ag1010 Cone5ag0718 . . . Csa05g00023 Chy09g01460 . Blo07g00320 . . . . . . . . Cmo02g01173 Cmo15g01070 Cma16g00026 . Car16g00023 . . Cpe13g00330 Bhi12g00684 . . . Hepe06g0819 . . . . . . . . . Lsi09g00001 . . Cme09g02009
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001721 4 2 1 1 1 2 3 2 2 2 2 2 4 2 2 4 2 2 4 2 2 5 3 3 3 1 1 2 2 1 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01007 Cma_Chr15 FPKM 17.695881 17.590225 21.685743 20.134174 12.496393 11.931923 13.995834 14.062094 14.879821 16.081049