Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01011 ATGATGTTCCGGACTCATAACACGCTCAACGTCATCTCGAGGGAACGCACCCTTATCTTGGAGGCCAGAAACCAACAAGACTGTGGTGGGTTGGAGCTCAATTACGTCGCCTTCACATCTCGAGGGAACGCCCTGACCTGTGCTATGCTTGCTGTTACTGCGTTTGAAGTGTACGATTGTAAATCGTCCGAGACGAGGTTCGTGCAGGAATTGGTTCTCTACGCAGCCAGCGCCGCCTTGAGCTGCTTGGTTCTCTTCGTTGGCCTACGCCACCTCGATCCCAACCGTGAGGCCTCCAAGAAGGCTCTTGAGCACAAGAAGGAGATTGCCAAACGCTTGGGCCGCCCTCTCATCCAGACTAACCCTTACGAGAAAGGAGTTTTGTTGTATGGACCTCCTGTTACTGGGAAAACAATGCTAGCAAAAGCTATTGCAAAGGAGTCTGGTGCTGTTTTCATTAATGGCAGAATTTCAAATCTGATGAGCAAATGGTTTGGCGATGCTCAAAAGCTAGTGGCTGCTGTGTTTAGCTTGGCTTATAAGCTCCAGCCTGCTATTATATTCATCGATGAAGTTGATAGTTTTCTGGGTCAGCGACGAACTACAGATCATGAAGCAATGACGAACATGAAGACCGAGTTCATGGCCTTATGGGATGGATTTACCACAGATCAGACTGCTCGTGTGATGGTTCTTGCTGCTACGAATCGCCCGTCCGAACTCGATGAAGCTATACTTCGGCGTCTTCCACAAGCTTTTGAGTTTGGAATACCTGACCGGAGGGAAAGAGCAGAGATATTAAAGGTGATTTTGAAGGGTGAGCGGGTTGAAAGCAATATAGAGTATGACTGTGTGGCAAGGTTGTGTGAGGGGTACACGGGTTCGGATATTCTTGAACTATGCAAGAAAGCTGCTTATTTTCCTGTCAGGGATCTTCTTGATGAAGAGAAGAAGGGGAAACAATCTTCTGAGCCAAGGCCAATGTCACAGTCAGATTTGGAAAAGGCTCTTGCTACATCTACAAAGACAAAGGTTGTTGCAAGCGAATACACTGGATTGAGCTCTAACTCATCAGGGTGGGGGGAAGGACACAGGGAAGCTGTTTGTTTGTTCATCTTCTTGTTCTTGATCATGCCGGTTTTCAGTACAGCAGTAGCTTCCTCCTTCTTCTTCGCCATTGCTTTTGTTTTGGTTCTTCGTTTTATAGCCAAAACATCTCTGTTGTACATGGTGGTCAAGGGTTTTCAATCAATTACAGACTATTTCCATGCCTACCAATACTACAGAATTCCCCAATTCGACGAGAATCTACAGCCGAATCAACTCTACCTTCGTGTACATGCCTACCTTCATTCCTTACCTTCTCTGGAGGATTCCAATTTCACGAACCTATTCTGTGGTGCAAAACCTAGCGATATTGTCCTCCGCCTCGACTCCGATCTAACCGTCCACGATTCCTTCCTCGGGGCGAAACTCCGATGGAAACTCGAGATGCATAGCGATCATCATCGGCAGAACAGCAGTTTTTCATTCGTTCTAAAGCTGAGGAAGGACGATAAACGAAGGGTATTCCGTCAGTACTTCCAACACATCCTCTCGATATCCGATGAGATTGAACAACAGAAGAGGGAAATCAAGATGTATATCACTGCGGACGGCTGCGCAAGACGTTGGATGGCGGTGCCGTTTACACATCCGGCGACATTCGGTACAGTGGTGATGGACATCGATTTGAAGAATAAGGTAAAATCCGACCTCGAACAGTTCCTGAGATCGAAGCAATATTATCACAGATTAGGCCGTGTGTGGAAACGAAGTTTCTTACTCTACGGTCAGCCGGGGACGGGAAAATCGAGCTTCGTGGCGGCTATGGCGAAGTTTCTGCAGTACGACATCTACAGCATCGATATGTCGAAAATCTCGAGCGACTCCGACATGACGATCCTGCTGCTTCAAACGACGCCGAAGTCGTTGATTCTGGTGGAGGATCTTGATCGGCATCTGATGAAGAGATCGACTGCGACGAGCGCGTCGGGTGTACTGAACTTCATGGACGGCATCGCATCGTACTGCGGTGAAGAGCGTGTGGTGGTGTTCACGATGACCGACAAAAGTGGGATCGATCAAGCGGCGCTGAGGCCGGGACGGGTGGACGTGCACCTTCATTTTCCGGCGTGTGACTTCTCGGCCTTCAAGACTTTAGCTATAAGCCATTTGGGGGTGAAGGATCACAAGCTCTTCTCTCAGGTGGAGGAGGTTTTTCAGAGTGGAACCAGCATGAGCCCCGCTGAAATTGGTGAGATCATGATAGCTAATCGGAGCTCGCCATCTCGGGCCTTAAAATCCATCATTACTGCTCTGCAAATCTACAGCGGCGATGGCGACGGGAGGGACCGGAATGGATTGAAATGGACGGGCGGTGGATCGGCGATTCATGATGAGGATGAGATCGGATCTAGACGCTTCTTTTTTAAAGATAATCTTAGTATGGGAAAACTGTATGGGCTTTTGAAATTGGGACTGAGAAAAAATGAAGAATGTCTGGATTCTCACTCTATGGAGAAGAACTGA 2571 48.15 MMFRTHNTLNVISRERTLILEARNQQDCGGLELNYVAFTSRGNALTCAMLAVTAFEVYDCKSSETRFVQELVLYAASAALSCLVLFVGLRHLDPNREASKKALEHKKEIAKRLGRPLIQTNPYEKGVLLYGPPVTGKTMLAKAIAKESGAVFINGRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTTDHEAMTNMKTEFMALWDGFTTDQTARVMVLAATNRPSELDEAILRRLPQAFEFGIPDRRERAEILKVILKGERVESNIEYDCVARLCEGYTGSDILELCKKAAYFPVRDLLDEEKKGKQSSEPRPMSQSDLEKALATSTKTKVVASEYTGLSSNSSGWGEGHREAVCLFIFLFLIMPVFSTAVASSFFFAIAFVLVLRFIAKTSLLYMVVKGFQSITDYFHAYQYYRIPQFDENLQPNQLYLRVHAYLHSLPSLEDSNFTNLFCGAKPSDIVLRLDSDLTVHDSFLGAKLRWKLEMHSDHHRQNSSFSFVLKLRKDDKRRVFRQYFQHILSISDEIEQQKREIKMYITADGCARRWMAVPFTHPATFGTVVMDIDLKNKVKSDLEQFLRSKQYYHRLGRVWKRSFLLYGQPGTGKSSFVAAMAKFLQYDIYSIDMSKISSDSDMTILLLQTTPKSLILVEDLDRHLMKRSTATSASGVLNFMDGIASYCGEERVVVFTMTDKSGIDQAALRPGRVDVHLHFPACDFSAFKTLAISHLGVKDHKLFSQVEEVFQSGTSMSPAEIGEIMIANRSSPSRALKSIITALQIYSGDGDGRDRNGLKWTGGGSAIHDEDEIGSRRFFFKDNLSMGKLYGLLKLGLRKNEECLDSHSMEKN 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6095861 6108506 + CmaCh15G010110.1 Cma15g01011 310161

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01011 856 Gene3D - 556 725 IPR027417 -
Cma15g01011 856 SMART AAA_5 603 727 IPR003593 -
Cma15g01011 856 SMART AAA_5 123 259 IPR003593 -
Cma15g01011 856 CDD AAA 108 256 - -
Cma15g01011 856 ProSitePatterns AAA-protein family signature. 229 248 IPR003960 GO:0005524|GO:0016887
Cma15g01011 856 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 338 IPR027417 -
Cma15g01011 856 Gene3D - 258 338 - -
Cma15g01011 856 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 539 785 IPR027417 -
Cma15g01011 856 CDD AAA 604 724 - -
Cma15g01011 856 Pfam Domain associated at C-terminal with AAA 407 496 IPR025753 -
Cma15g01011 856 Gene3D - 124 342 IPR027417 -
Cma15g01011 856 Pfam AAA+ lid domain 285 315 IPR041569 -
Cma15g01011 856 PANTHER BNAANNG18710D PROTEIN 391 796 - -
Cma15g01011 856 Pfam ATPase family associated with various cellular activities (AAA) 608 724 IPR003959 GO:0005524|GO:0016887
Cma15g01011 856 Pfam ATPase family associated with various cellular activities (AAA) 127 255 IPR003959 GO:0005524|GO:0016887
Cma15g01011 856 PANTHER BCS1 AAA-TYPE ATPASE 391 796 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01011 - - K08900 csv:101204309 770.385
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma15g01011 Cma18g01333 CCT
Cma15g01011 Cma16g00030 CCT
Cma15g01011 Cma18g01333 ECH
Cma15g01011 Cma16g00030 ECH
Cma02g01138 Cma15g01011 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00982 Cma-Chr6:6658479 Cma15g01011 Cma-Chr15:6095861 8.43E-164 dispersed
Cma15g01011 Cma-Chr15:6095861 Cma14g01037 Cma-Chr14:5458866 2.02E-84 dispersed
Cma14g02127 Cma-Chr14:14614888 Cma15g01011 Cma-Chr15:6095861 3.06E-164 wgd
Cma15g01011 Cma-Chr15:6095861 Cma16g00030 Cma-Chr16:138093 1.19E-175 wgd
Cma15g01011 Cma-Chr15:6095861 Cma18g01333 Cma-Chr18:10170257 4.72E-180 wgd
Cma15g01011 Cma-Chr15:6095861 Cma02g01138 Cma-Chr2:6729206 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g994 Blo06g01054 Blo15g00077 . Bda07g01950 . Bpe07g01027 . Bma14g02021 Cmo16g00035 Cmo18g01364 Cma02g01138 Cma15g01011 Car02g00942 Car15g00945 . Cpe05g00585 Cpe14g00023 Bhi01g01520 . . . . Mch10g0036 . Cla01g00024 . . . . . . . . . . . . . Cme06g01170 . Blo09g00009 . Bda15g00794 . Bpe12g00340 . Bma12g01222 . Cmo02g01169 Cmo15g01074 Cma16g00030 Cma18g01333 Car16g00027 Car18g01248 Cpe09g00014 Cpe13g00326 Bhi12g00680 . . Lac11g0112 Hepe06g0815 . Lcy12g0093 Cla05g00988 Cam05g1079 Cec05g1087 Cco05g1081 Clacu05g1073 Cmu05g1023 Cre05g1097 Lsi09g00005 Csa03g01964 Chy06g01176 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001920 2 2 2 3 3 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 1 2 2 2 2 2 3 2 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01011 Cma_Chr15 FPKM 20.012447 21.105148 0.511637 0.95721 1.456057 1.341523 1.541473 0.444069 0.421223 0.251453