Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01014 ATGGATACTCCTCCTTGGCCACAGTTTGCAGGTGGTGGAGTGGTTGTTAAACAAATGGAAGGAGGTGAGTCGTCGAGTTCTTCAAAGGGCGGTAATATTAATATTAATAATGTTAATATTAATATTAATAATAATAACAATAATGGTAATTTGTTGGAGAGAAAGGCAAGGCCTCAAAAGGAGCAAGCTTTGAACTGTCCGAGGTGTAATTCGACCAACACAAAATTCTGTTACTACAACAATTACAGCCTGTCTCAGCCGAGGTATTTTTGTAAGTCTTGTCGGAGGTATTGGACGGAAGGTGGCTCTTTAAGGAATGTTCCAGTGGGTGGCGGCTCAAGGAAGAACAAAAGATCTTCACTTTCAGCACCAGTTGATAAGAAGATCAACGGCTCTGATCAAAACCCTAAAATGATCCACCATGCTCATCAGGATCTCAATCTTGCAATCTTCCCTCCGAATAATAATAACCCTATTTCTTCTTCTTCTTCTACTTCTTCTTCTTCTCACCTTTTCGGTTCTTTCATGGCGCCGCCGCCGCCGCCGGCTGCGGCGGCCGGAGTCTTCAATGTCGCTGGTGGGTTTGGATTTAATGAGCTGAAACCATCAAGCTTAAGTTTTTCTTTGGATGGGTTTGAGAGTGGCAGTGGGTATGGGAATCATCATCACCATCATCAAGATCATCAAGATCAGACGGCTGTTATGTTTCCAATTCAAGATTTGAAGCAAAGTAATGGGAGTGATGAATTTGAACAGAATAGAGGAGGAGGTCGGCATGGAGGGGATAATTCAAGTGGCGGATTTTGGAATGGGATGTTGGATGGTGGATCATGGTAA 837 43.13 MDTPPWPQFAGGGVVVKQMEGGESSSSSKGGNININNVNININNNNNNGNLLERKARPQKEQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKSCRRYWTEGGSLRNVPVGGGSRKNKRSSLSAPVDKKINGSDQNPKMIHHAHQDLNLAIFPPNNNNPISSSSSTSSSSHLFGSFMAPPPPPAAAAGVFNVAGGFGFNELKPSSLSFSLDGFESGSGYGNHHHHHQDHQDQTAVMFPIQDLKQSNGSDEFEQNRGGGRHGGDNSSGGFWNGMLDGGSW 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6266996 6269122 - CmaCh15G010140.1 Cma15g01014 310164

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01014 278 Pfam Dof domain, zinc finger 62 118 IPR003851 GO:0003677|GO:0006355
Cma15g01014 278 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 44 274 IPR045174 GO:0003700|GO:0006355
Cma15g01014 278 MobiDBLite consensus disorder prediction 245 278 - -
Cma15g01014 278 MobiDBLite consensus disorder prediction 152 173 - -
Cma15g01014 278 MobiDBLite consensus disorder prediction 105 134 - -
Cma15g01014 278 ProSitePatterns Zinc finger Dof-type signature. 66 102 IPR003851 GO:0003677|GO:0006355
Cma15g01014 278 ProSiteProfiles Zinc finger Dof-type profile. 64 118 IPR003851 GO:0003677|GO:0006355
Cma15g01014 278 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 44 274 - -
Cma15g01014 278 MobiDBLite consensus disorder prediction 113 129 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01014 - - - cmos:111430405 424.091
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma15g01014 Cma16g00034 CCT
Cma15g01014 Cma16g00034 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00932 Cma-Chr2:5549568 Cma15g01014 Cma-Chr15:6266996 3.37E-53 dispersed
Cma13g00200 Cma-Chr13:1588167 Cma15g01014 Cma-Chr15:6266996 9.26E-40 dispersed
Cma15g01014 Cma-Chr15:6266996 Cma15g01306 Cma-Chr15:8236253 5.53E-51 dispersed
Cma15g01014 Cma-Chr15:6266996 Cma16g00034 Cma-Chr16:154362 2.01E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1009 . . Bda05g00131 Bda07g01944 Bpe03g00228 . Bma10g01308 Bma14g02017 Cmo16g00040 . . Cma15g01014 . Car15g00949 . . Cpe14g00027 Bhi01g01514 . . . Hepe07g0043 Mch10g0043 . Cla01g00029 Cam01g0028 Cec01g0026 Cco01g0028 Clacu01g0028 Cmu01g0027 Cre09g2479 . Cone5ag0708 . . . . . Cme06g01166 Blo07g00326 Blo09g00015 . . . . . . . . Cmo15g01079 Cma16g00034 . Car16g00033 . . Cpe13g00322 Bhi12g00672 . . . . . . Cla05g00985 Cam05g1076 Cec05g1083 Cco05g1076 Clacu05g1070 Cmu05g1021 Cre05g1095 Lsi09g00009 Csa03g01968 Chy06g01178 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000183 6 5 2 3 4 8 10 7 8 6 7 7 6 7 8 9 7 3 5 7 7 7 6 11 6 8 5 8 5 3 191
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36455 PF02701 zf-Dof 9.20E-34 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01014 Cma_Chr15 FPKM 39.648125 37.943924 18.196165 17.556379 0.349025 0.385849 0.509095 54.347603 56.297691 67.363869