Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g01016 ATGATGCAGAAACGAAGAACTCTCGCTTTGAAACCCTCAAGCCGCCATGATTTTGCATCAGATCACGAGGAATACGACGACGTTTCCTGTCAGAAATGCGGCTCCGGCGACTCTCCGGCTGAGCTTCTTCTCTGCGACAAATGTGATAGAGGGTATCATCTCTTTTGTCTTACGCCCATCCTCGTTTCCGTCCCCAAGGGATCGTGGTTCTGCCCGACTTGCTCCAACCACAAGAAGCTCCAATCCTTCCCTCTTGTTCAAACCAAAATTGTTGATTTTTTCCGCATCCAACGACCTGTTGACTCTCAAATGGACTTAAACCAAGAGACCCGAAAGAAACGAAGACGAACTGGTAGCTTAGTACTTAGTAAAAAGAGAAGAAAGCTCTTGCCATTTAAGCCGACTGCAGATACTGCGAGACGCTTGGAACAAATGGCATCACTGGCAACAGCATTGACGGCTACAGGTACAGATTTCAGTAACGAGCTTACATATATGCGTGGCATGGCACCAAGGTCTGCAAACTGCGCATCTCTTGAGCACGGAGGAATGCAGGTTCTTCCAAAAGAGGACATTGAAACCTTAAACTTGTGCAAAAGTATGATGGAGAGAGGAGAATGGCCTCCTCTTATGGTTGTTTTTGATCCTCGAGAAGGGTTTACTGTGGAGGCTGATAGGTTTATAAAGGACTGGACCATAATTACAGAATATACTGGTGATGTTGATTACTTGAGGAATCGAGAACATGATGATGGGGATAGTATGATGACATTACTGTCTGCGACTAACCGATCTAAAAGCCTCGTCATTTGTCCCGACAAACGTAGTAACATTGCCCGTTTTATAAATGGAATCAACAACCACACACCGGATGGTAGGAAAAAGCAAAACCTTAAGTGTGTCAGGTTCAATGTAAATGGTGAATGTAGAGTTCTACTGATTGCAAACAGAGACATATCTAAGGGTGAGAGATTGTATTATGACTACAATGGATATGAACATGAATACCCCACTGAGCACTTCGTGTAA 1029 44.31 MMQKRRTLALKPSSRHDFASDHEEYDDVSCQKCGSGDSPAELLLCDKCDRGYHLFCLTPILVSVPKGSWFCPTCSNHKKLQSFPLVQTKIVDFFRIQRPVDSQMDLNQETRKKRRRTGSLVLSKKRRKLLPFKPTADTARRLEQMASLATALTATGTDFSNELTYMRGMAPRSANCASLEHGGMQVLPKEDIETLNLCKSMMERGEWPPLMVVFDPREGFTVEADRFIKDWTIITEYTGDVDYLRNREHDDGDSMMTLLSATNRSKSLVICPDKRSNIARFINGINNHTPDGRKKQNLKCVRFNVNGECRVLLIANRDISKGERLYYDYNGYEHEYPTEHFV 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6281258 6283715 + CmaCh15G010160.1 Cma15g01016 310166

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g01016 342 SUPERFAMILY SET domain 200 330 IPR046341 -
Cma15g01016 342 CDD SET_ATXR5_6-like 205 342 - -
Cma15g01016 342 Gene3D SET domain 114 342 IPR046341 -
Cma15g01016 342 ProSiteProfiles Zinc finger PHD-type profile. 27 77 IPR019787 -
Cma15g01016 342 PANTHER HISTONE ACETYLTRANSFERASE 3 339 - -
Cma15g01016 342 Pfam SET domain 255 330 IPR001214 GO:0005515
Cma15g01016 342 Pfam PHD-finger 30 76 IPR019787 -
Cma15g01016 342 ProSitePatterns Zinc finger PHD-type signature. 30 74 IPR019786 -
Cma15g01016 342 SMART PHD_3 29 75 IPR001965 -
Cma15g01016 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 90 IPR013083 -
Cma15g01016 342 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 3 339 - -
Cma15g01016 342 SUPERFAMILY FYVE/PHD zinc finger 20 80 IPR011011 -
Cma15g01016 342 CDD PHD_RSF1 30 74 - -
Cma15g01016 342 ProSiteProfiles SET domain profile. 208 330 IPR001214 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g01016 K24406 ATXR5_6; [histone H3]-lysine27 N-methyltransferase [EC:2.1.1.369] - csv:101205046 625.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00623 Cma-Chr2:3756334 Cma15g01016 Cma-Chr15:6281258 6.27E-153 dispersed
Cma11g01422 Cma-Chr11:9368560 Cma15g01016 Cma-Chr15:6281258 6.83E-10 dispersed
Cma14g00642 Cma-Chr14:3189936 Cma15g01016 Cma-Chr15:6281258 1.01E-09 dispersed
Cma15g01016 Cma-Chr15:6281258 Cma20g01067 Cma-Chr20:8047687 3.45E-156 dispersed
Cma16g00335 Cma-Chr16:1574960 Cma15g01016 Cma-Chr15:6281258 1.98E-06 dispersed
Cma15g01016 Cma-Chr15:6281258 Cma02g01135 Cma-Chr2:6711704 1.19E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1011 Blo06g01057 . . . . . . . . . . Cma15g01016 Car02g00937 Car15g00951 . Cpe05g00589 . . . . . . . . Cla01g00030 Cam01g0029 Cec01g0027 Cco01g0029 Clacu01g0029 Cmu01g0028 Cre09g2478 . . . . . . . . . . . Bda15g00790 . Bpe12g00344 Bma08g00393 . . Cmo02g01162 Cmo15g01080 . . . . . Cpe13g00321 Bhi12g00670 . . . Hepe06g0809 . . . . . . . . . Lsi09g00010 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001827 2 3 2 2 2 2 5 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 1 1 2 2 4 1 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36456 PF00856 SET 6.10E-05 No_clan Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g01016 Cma_Chr15 FPKM 3.289191 2.709338 0.682988 0.681848 4.344293 4.330462 4.362817 0.0 0.43067 0.456399